Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.2e-97 359.8 179 100.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.6e-89 332.8 179 92.2
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 6.2e-89 330.9 179 91.6
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.5e-87 326.2 179 90.5
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.9e-86 321.2 178 89.9
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.1e-85 320.1 178 89.3
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.4e-85 319.7 179 88.8
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.5e-84 315.1 178 87.6
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.1e-80 303.5 179 83.8
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.4e-80 303.1 179 83.8
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.8e-80 302.8 178 83.1
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.8e-80 302.8 178 83.1
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 5.3e-80 301.2 179 83.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 6.9e-80 300.8 179 81.6
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.2e-79 300.1 173 85.5
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.6e-79 298.9 180 81.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.3e-78 296.6 173 84.4
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 3.8e-78 295.0 179 83.8
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 8.4e-78 293.9 178 80.9
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 8.4e-78 293.9 179 81.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.4e-77 293.1 178 80.9
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.4e-77 292.4 179 81.0
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 4.2e-77 291.6 169 85.2
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 7.1e-77 290.8 179 81.0
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 9.3e-77 290.4 179 80.4
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 9.3e-77 290.4 179 78.8
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.2e-76 290.0 179 82.1
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.6e-76 289.7 174 82.8
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.6e-76 289.7 180 80.6
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 2.1e-76 289.3 179 78.2
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.1e-76 289.3 179 79.3
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 2.7e-76 288.9 179 81.6
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 3.5e-76 288.5 179 79.3
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 3.5e-76 288.5 179 79.3
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.5e-76 288.5 179 81.0
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.0e-75 287.0 179 82.1
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 3.9e-75 285.0 179 76.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 77.1
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 6.6e-75 284.3 178 78.1
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.7e-75 283.9 179 78.8
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 77.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.5e-74 283.1 176 79.5
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.5e-74 283.1 179 77.7
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 2.5e-74 282.3 179 77.1
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 78.8
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.3e-74 280.8 169 80.5
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.6e-74 280.4 179 79.3
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 78.8
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.3e-73 280.0 173 82.7
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.3e-73 280.0 180 77.8
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-73 279.3 180 79.4
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 78.8
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 78.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 76.5
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.8e-73 278.9 175 77.1
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 79.9
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 76.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 77.7
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 77.7
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 77.7
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 76.0
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 8.1e-73 277.3 177 78.0
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 77.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 76.0
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.4e-72 276.6 177 79.7
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 77.7
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 75.4
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 77.7
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 78.2
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 78.2
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 74.9
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 77.7
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 77.1
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 76.5
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 76.0
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 76.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 9.0e-72 273.9 175 77.7
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 9.0e-72 273.9 168 81.5
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 76.0
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.5e-71 273.1 177 78.0
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.5e-71 273.1 178 75.8
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.6e-71 272.3 207 70.0
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 4.5e-71 271.6 174 77.0
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 5.8e-71 271.2 177 76.8
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.9e-70 268.9 178 76.4
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 73.2
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 74.3
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 4.9e-70 268.1 175 77.7
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 6.4e-70 267.7 175 75.4
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 75.4
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.1e-69 266.9 176 76.7
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.1e-69 266.9 171 78.9
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.4e-69 265.8 176 76.1
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.4e-69 265.8 177 75.1
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 3.2e-69 265.4 169 77.5
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 73.2
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 5.4e-69 264.6 176 75.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 5.4e-69 264.6 188 71.8
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 72.6
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 7.1e-69 264.2 176 76.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 9.3e-69 263.8 176 75.6
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 71.5
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 72.6
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.1e-68 262.7 175 75.4
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 2.7e-68 262.3 169 76.3
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 6.0e-68 261.2 178 74.2
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 6.0e-68 261.2 168 76.2
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 73.7
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 7.9e-68 260.8 173 74.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.0e-67 260.4 169 76.9
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.3e-67 260.0 175 73.7
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 2.3e-67 259.2 174 74.1
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.3e-67 259.2 221 64.3
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.1e-66 256.9 158 81.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 7.4e-66 254.2 165 76.4
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.3e-65 253.4 182 70.3
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.4e-64 249.2 212 63.7
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 2.4e-64 249.2 172 73.8
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.5e-63 245.0 160 75.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 7.6e-63 244.2 174 71.3
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.1e-61 240.4 175 69.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.2e-61 238.8 150 80.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 9.3e-61 237.3 150 80.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.3e-59 233.4 147 80.3
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 4.3e-58 228.4 169 67.5
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 5.7e-58 228.0 169 70.4
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.6e-57 226.5 168 70.8
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.5e-50 202.6 120 85.0
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-48 196.8 170 64.1
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.2e-46 189.5 169 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 6.5e-46 188.0 170 55.3
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 9.4e-45 184.1 117 82.1
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.2e-44 183.7 129 74.4
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.1e-44 183.0 174 52.3
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.1e-44 183.0 170 54.1
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 3.0e-43 179.1 115 76.5
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 5.7e-42 174.9 167 50.9
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 5.7e-42 174.9 163 54.0
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.8e-40 169.9 160 59.4
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.1e-36 156.4 105 72.4
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.6e-36 155.6 188 52.1
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.0e-35 154.1 86 88.4
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.4e-35 153.7 171 50.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.9e-35 152.1 222 41.9
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.6e-34 149.4 161 50.9
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 4.4e-34 148.7 83 85.5
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 4.1e-32 142.1 83 79.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.3e-32 141.7 163 47.2
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.5e-31 140.2 98 73.5
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 5.0e-30 135.2 88 76.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 8.5e-30 134.4 139 53.2
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.5e-29 131.7 94 69.1
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.2e-28 130.6 93 67.7
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 6.7e-27 124.8 117 61.5
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 4.8e-25 118.6 97 62.9
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 3.5e-23 112.5 82 68.3
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 4.5e-23 112.1 75 74.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 8.5e-22 107.8 138 50.0
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.3e-14 84.0 71 59.2
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 4.2e-13 79.0 225 31.6
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 4.2e-13 79.0 63 60.3
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 1.4e-11 73.9 160 34.4
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.3e-11 73.2 42 76.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 5.2e-11 72.0 45 68.9
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.3e-09 67.4 85 47.1


User provided reference genes

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