Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib175G0003 Durio zibethinus HOM05D007768 ORTHO05D009831 1.0e-153 547.0 340 100.0
Duzib212G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 6.7e-92 341.7 414 62.8
Duzib151G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 1.2e-80 304.3 149 99.3
COL.COLO4_12975 Corchorus olitorius HOM05D007768 ORTHO05D009831 1.9e-70 270.4 410 56.6
Gorai.006G229200 Gossypium raimondii HOM05D007768 ORTHO05D009831 6.3e-58 228.8 377 51.5
Gohir.A10G138600 Gossypium hirsutum HOM05D007768 ORTHO05D009831 3.5e-56 223.0 187 61.0
Gorai.011G141400 Gossypium raimondii HOM05D007768 ORTHO05D009831 3.5e-56 223.0 187 61.0
Gohir.D09G205201 Gossypium hirsutum HOM05D007768 ORTHO05D009831 7.7e-56 221.9 404 48.0
Gohir.D10G128200 Gossypium hirsutum HOM05D007768 ORTHO05D009831 7.7e-56 221.9 187 61.0
Gohir.A09G211750 Gossypium hirsutum HOM05D007768 ORTHO05D009831 2.3e-52 210.3 396 48.0
CiPaw.09G024100 Carya illinoinensis HOM05D007768 ORTHO05D009831 5.7e-51 205.7 409 34.2
Thecc.04G176800 Theobroma cacao HOM05D007768 ORTHO05D009831 2.2e-50 203.8 193 54.4
TWI15G0176 Tripterygium wilfordii HOM05D007768 ORTHO05D009831 2.4e-49 200.3 415 44.8
CiPaw.02G053300 Carya illinoinensis HOM05D007768 ORTHO05D009831 3.5e-48 196.4 412 46.6
Sc07g0009860 Simmondsia chinensis HOM05D007768 ORTHO05D009831 1.1e-46 191.4 387 45.2
Sabra17G0017200 Salix brachista HOM05D007768 ORTHO05D009831 1.9e-46 190.7 392 45.9
THA.LOC104803778 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 1.2e-45 188.0 401 45.4
Atru.chr4.1241 Acer truncatum HOM05D007768 ORTHO05D009831 6.8e-44 182.2 335 46.0
Sabra02G0142500 Salix brachista HOM05D007768 ORTHO05D009831 8.8e-44 181.8 410 44.4
AT3G59510 Arabidopsis thaliana HOM05D007768 ORTHO05D009831 2.0e-40 170.6 399 35.8
QL10p050487 Quercus lobata HOM05D007768 ORTHO05D009831 2.0e-40 170.6 392 43.9
AL5G41420 Arabidopsis lyrata HOM05D007768 ORTHO05D009831 5.9e-40 169.1 398 35.2
CSS0032062 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 5.9e-40 169.1 417 41.5
Carub.0005s2624 Capsella rubella HOM05D007768 ORTHO05D009831 5.0e-39 166.0 387 35.9
Sp5g03650 Schrenkiella parvula HOM05D007768 ORTHO05D009831 3.2e-38 163.3 392 35.7
Cc04_g10990 Coffea canephora HOM05D007768 ORTHO05D009831 5.5e-38 162.5 410 42.0
C04p33400 Brassica napus HOM05D007768 ORTHO05D009831 9.4e-38 161.8 392 43.1
BolC4t24901H Brassica oleracea HOM05D007768 ORTHO05D009831 9.4e-38 161.8 392 43.1
Thhalv10006500m.g Eutrema salsugineum HOM05D007768 ORTHO05D009831 9.4e-38 161.8 393 34.9
THA.LOC104824141 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 2.1e-37 160.6 376 41.5
Psat5g289560 Pisum sativum HOM05D007768 ORTHO05D009831 2.7e-37 160.2 412 39.3
BcaC02g10057 Brassica carinata HOM05D007768 ORTHO05D009831 4.7e-37 159.5 392 42.9
BraA07t30114Z Brassica rapa HOM05D007768 ORTHO05D009831 6.1e-37 159.1 395 35.4
BcaC08g44993 Brassica carinata HOM05D007768 ORTHO05D009831 8.0e-37 158.7 395 35.4
A07p24690 Brassica napus HOM05D007768 ORTHO05D009831 8.0e-37 158.7 395 35.4
C06p26230 Brassica napus HOM05D007768 ORTHO05D009831 8.0e-37 158.7 395 35.4
BolC6t37786H Brassica oleracea HOM05D007768 ORTHO05D009831 8.0e-37 158.7 395 35.4
CARHR169890 Cardamine hirsuta HOM05D007768 ORTHO05D009831 8.0e-37 158.7 392 41.6
Medtr2g099020 Medicago truncatula HOM05D007768 ORTHO05D009831 8.0e-37 158.7 401 42.4
Aa31LG10G13830 Aethionema arabicum HOM05D007768 ORTHO05D009831 1.8e-36 157.5 203 52.2
ATR0743G119 Amborella trichopoda HOM05D007768 ORTHO05D009831 1.8e-36 157.5 376 35.6
Lalb_Chr24g0396811 Lupinus albus HOM05D007768 ORTHO05D009831 1.8e-36 157.5 407 41.3
CiPaw.10G021200 Carya illinoinensis HOM05D007768 ORTHO05D009831 4.0e-36 156.4 403 41.4
Cc04_g11030 Coffea canephora HOM05D007768 ORTHO05D009831 6.8e-36 155.6 410 40.7
BcaB02g07459 Brassica carinata HOM05D007768 ORTHO05D009831 8.8e-36 155.2 396 35.1
BcaB02g08219 Brassica carinata HOM05D007768 ORTHO05D009831 1.5e-35 154.5 386 42.5
BraA04t15942Z Brassica rapa HOM05D007768 ORTHO05D009831 1.5e-35 154.5 393 43.3
A04p02150 Brassica napus HOM05D007768 ORTHO05D009831 2.6e-35 153.7 396 42.7
Peaxi162Scf01052g00315 Petunia axillaris HOM05D007768 ORTHO05D009831 3.4e-35 153.3 327 30.9
Ciclev10020393m.g Citrus clementina HOM05D007768 ORTHO05D009831 7.5e-35 152.1 408 42.4
Hma1.2p1_0886F.1_g232680 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 1.7e-34 151.0 398 43.5
Hma1.2p1_2011F.1_g311060 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 4.9e-34 149.4 398 43.2
Rhsim09G0024900 Rhododendron simsii HOM05D007768 ORTHO05D009831 4.1e-33 146.4 401 42.6
Haze_01481 Corylus avellana HOM05D007768 ORTHO05D009831 5.4e-33 146.0 397 41.6
TPR.G18860 Trifolium pratense HOM05D007768 ORTHO05D009831 7.0e-33 145.6 407 40.5
Lju337C6T2 Lonicera japonica HOM05D007768 ORTHO05D009831 4.5e-32 142.9 400 41.2
CSS0025913 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 7.7e-32 142.1 423 38.3
Sc25g0002590 Simmondsia chinensis HOM05D007768 ORTHO05D009831 2.3e-31 140.6 397 41.3
Nitab4.5_0011755g0020 Nicotiana tabacum HOM05D007768 ORTHO05D009831 1.5e-30 137.9 211 46.9
FvH4_4g10920 Fragaria vesca HOM05D007768 ORTHO05D009831 3.3e-30 136.7 399 39.8
FAN12G0864 Fragaria x ananassa HOM05D007768 ORTHO05D009831 3.3e-30 136.7 399 39.8
Potri.017G028400 Populus trichocarpa HOM05D007768 ORTHO05D009831 4.3e-30 136.3 412 40.8
Ah.13g072810 Amaranthus hybridus HOM05D007768 ORTHO05D009831 5.6e-30 136.0 399 34.8
FAN17G2755 Fragaria x ananassa HOM05D007768 ORTHO05D009831 1.2e-29 134.8 395 40.0
EL10Ac3g05983 Beta vulgaris HOM05D007768 ORTHO05D009831 1.6e-29 134.4 401 33.9
FAN07G2880 Fragaria x ananassa HOM05D007768 ORTHO05D009831 6.1e-29 132.5 395 39.5
Lalb_Chr14g0372491 Lupinus albus HOM05D007768 ORTHO05D009831 1.8e-28 131.0 389 40.4
Potri.017G028600 Populus trichocarpa HOM05D007768 ORTHO05D009831 8.9e-28 128.6 412 40.8
Rhsim02G0081500 Rhododendron simsii HOM05D000578 ORTHO05D000422 2.6e-27 127.1 412 39.8
Cfa015181 Carpinus fangiana HOM05D007768 ORTHO05D009831 7.5e-27 125.6 397 39.8
AUR62023860 Chenopodium quinoa HOM05D007768 ORTHO05D009831 3.7e-26 123.2 400 34.0
RcHm_v2.0_Chr4g0406451 Rosa chinensis HOM05D007768 ORTHO05D009831 4.1e-25 119.8 402 37.1
Sopen05g029110 Solanum pennellii HOM05D007768 ORTHO05D009831 5.4e-25 119.4 409 37.4
THA.LOC104802311 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 7.0e-25 119.0 389 38.0
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 1.2e-24 118.2 384 38.3
Duzib151G0914 Durio zibethinus HOM05D007768 ORTHO05D009831 5.0e-23 112.8 228 51.3
DCAR_016491 Daucus carota HOM05D007768 ORTHO05D009831 6.6e-23 112.5 394 35.0
Nitab4.5_0006622g0010 Nicotiana tabacum HOM05D007768 ORTHO05D009831 3.6e-21 106.7 401 35.7
Ah.07g202210 Amaranthus hybridus HOM05D007768 ORTHO05D009831 3.1e-20 103.6 401 31.9
CAN.G1231.13 Capsicum annuum HOM05D007150 ORTHO05D008994 4.0e-20 103.2 368 32.6
PGSC0003DMG400007033 Solanum tuberosum HOM05D007768 ORTHO05D009831 2.2e-18 97.4 409 35.2
MBI16_g31755_MAGBIO Magnolia biondii HOM05D007150 ORTHO05D008994 6.4e-18 95.9 369 30.9
HanXRQChr16g0513181 Helianthus annuus HOM05D007150 ORTHO05D008994 8.3e-18 95.5 370 28.6
Solyc05g050700.1 Solanum lycopersicum HOM05D007768 ORTHO05D009831 8.3e-18 95.5 409 35.2
SEGI_19656 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 1.1e-17 95.1 146 38.4
Nitab4.5_0002815g0080 Nicotiana tabacum HOM05D007150 ORTHO05D008994 1.6e-16 91.3 364 31.6
AUR62002327 Chenopodium quinoa HOM05D007768 ORTHO05D009831 1.0e-15 88.6 348 34.2
Duzib052G1025 Durio zibethinus HOM05D007150 ORTHO05D008994 6.6e-15 85.9 142 33.8
Phvul.007G038700 Phaseolus vulgaris HOM05D007150 ORTHO05D008994 1.1e-14 85.1 372 29.8
SEGI_39952 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 1.5e-14 84.7 150 34.0
Actinidia11296 Actinidia chinensis HOM05D007768 ORTHO05D009831 2.5e-14 84.0 208 32.2
Medtr1g107500 Medicago truncatula HOM05D007150 ORTHO05D008994 2.5e-14 84.0 143 32.2
TPR.G27772 Trifolium pratense HOM05D007150 ORTHO05D008994 5.6e-14 82.8 178 30.9
SEGI_31027 Sequoiadendron giganteum HOM05D004495 ORTHO05D008994 9.5e-14 82.0 138 35.5
SGA_v2.0_scaffold32G13043 Striga asiatica HOM05D007150 ORTHO05D008994 1.6e-13 81.3 208 31.2
Dinv22750 Davidia involucrata HOM05D007768 ORTHO05D009831 2.1e-13 80.9 84 53.6
Lj5g0008538 Lotus japonicus HOM05D007150 ORTHO05D008994 3.6e-13 80.1 144 31.2
ATR0724G003 Amborella trichopoda HOM05D007150 ORTHO05D008994 1.1e-12 78.6 141 35.5
Cc02_g19160 Coffea canephora HOM05D007150 ORTHO05D008994 1.8e-12 77.8 142 31.7
Ca_11085_v3 Cicer arietinum L. HOM05D007150 ORTHO05D008994 2.3e-12 77.4 138 32.6
Migut.B00379 Erythranthe guttata HOM05D007150 ORTHO05D008994 1.2e-11 75.1 371 29.1
HanXRQChr10g0301551 Helianthus annuus HOM05D007150 ORTHO05D008994 2.0e-11 74.3 373 29.5
Manes.07G069300 Manihot esculenta HOM05D007150 ORTHO05D008994 2.6e-11 73.9 142 31.7
CSS0037176 Camellia sinensis var. sinensis HOM05D007150 ORTHO05D008994 9.8e-11 72.0 368 28.8
Cfa004568 Carpinus fangiana HOM05D007150 ORTHO05D008994 1.3e-10 71.6 142 31.7
Nitab4.5_0005392g0010 Nicotiana tabacum HOM05D007150 ORTHO05D008994 1.3e-10 71.6 364 29.4
Sc08g0001480 Simmondsia chinensis HOM05D007150 ORTHO05D008994 1.3e-10 71.6 137 34.3
Aqoxy5G01157 Aquilegia oxysepala HOM05D007150 ORTHO05D008994 1.7e-10 71.2 374 28.3
CiPaw.05G010400 Carya illinoinensis HOM05D007150 ORTHO05D008994 1.7e-10 71.2 137 32.1
MSTRG.16718 Avicennia marina HOM05D007150 ORTHO05D008994 2.9e-10 70.5 143 32.2
Sabra16G0189500 Salix brachista HOM05D007150 ORTHO05D008994 3.7e-10 70.1 142 29.6
Sopen01g049850 Solanum pennellii HOM05D007150 ORTHO05D008994 3.7e-10 70.1 371 28.3
Solyc01g107670.2 Solanum lycopersicum HOM05D007150 ORTHO05D008994 1.1e-09 68.6 371 28.0
BolC2t07713H Brassica oleracea HOM05D004495 ORTHO05D005361 1.4e-09 68.2 400 28.0
Nn1g04720 Nelumbo nucifera HOM05D007150 ORTHO05D008994 1.9e-09 67.8 134 32.8
CiPaw.01G098100 Carya illinoinensis HOM05D007768 ORTHO05D009831 2.4e-09 67.4 63 52.4
C09p46250 Brassica napus HOM05D004495 ORTHO05D005361 4.1e-09 66.6 393 28.0
BolC9t57489H Brassica oleracea HOM05D004495 ORTHO05D005361 4.1e-09 66.6 393 28.0
Potri.017G028325 Populus trichocarpa HOM05D007768 ORTHO05D009831 4.1e-09 66.6 76 52.6
BcaB05g22215 Brassica carinata HOM05D004495 ORTHO05D005361 1.2e-08 65.1 397 28.0
C02p16030 Brassica napus HOM05D004495 ORTHO05D005361 1.2e-08 65.1 397 28.0
PGSC0003DMG400025867 Solanum tuberosum HOM05D007150 ORTHO05D008994 2.1e-08 64.3 372 29.0
Nn5g30403 Nelumbo nucifera HOM05D007150 ORTHO05D008994 3.5e-08 63.5 123 32.5
Potri.001G301400 Populus trichocarpa HOM05D007150 ORTHO05D008994 3.5e-08 63.5 142 26.8
Rhsim11G0160700 Rhododendron simsii HOM05D007150 ORTHO05D008994 3.5e-08 63.5 359 28.7
DCAR_021995 Daucus carota HOM05D007150 ORTHO05D008994 7.8e-08 62.4 134 29.1
Lj4A213T43 Lonicera japonica HOM05D004495 ORTHO05D005361 7.8e-08 62.4 407 20.6
Glyma.02G051300 Glycine max HOM05D004495 ORTHO05D005361 1.0e-07 62.0 409 28.6
CSS0012154 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 3.0e-07 60.5 193 31.6
TWI75G0581 Tripterygium wilfordii HOM05D007150 ORTHO05D008994 3.9e-07 60.1 133 29.3
CANSAT25G0571 Cannabis sativa HOM05D007150 ORTHO05D008994 5.1e-07 59.7 142 26.1
Haze_10159 Corylus avellana HOM05D007150 ORTHO05D008994 8.6e-07 58.9 137 29.9
AagrBONN_evm.TU.Sc2ySwM_368.1906 Anthoceros agrestis HOM05D004495 ORTHO05D005361 1.1e-06 58.5 382 26.4
Potri.009G097100 Populus trichocarpa HOM05D007150 ORTHO05D008994 1.1e-06 58.5 142 26.8
PGSC0003DMG400003543 Solanum tuberosum HOM05D004495 ORTHO05D005361 1.1e-06 58.5 63 47.6
Gohir.D12G061600 Gossypium hirsutum HOM05D004495 ORTHO05D005361 1.5e-06 58.2 363 27.5
CAN.G112.12 Capsicum annuum HOM05D007768 ORTHO05D009831 1.9e-06 57.8 66 45.5
Nitab4.5_0002266g0080 Nicotiana tabacum HOM05D004495 ORTHO05D005361 3.3e-06 57.0 64 51.6
Glyma.15G029600 Glycine max HOM05D007768 ORTHO05D009831 4.3e-06 56.6 52 50.0
Nitab4.5_0004086g0020 Nicotiana tabacum HOM05D004495 ORTHO05D005361 7.3e-06 55.8 73 50.7
SEGI_35079 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 9.5e-06 55.5 100 33.0
Solyc02g084610.1 Solanum lycopersicum HOM05D004495 ORTHO05D005361 9.5e-06 55.5 57 49.1
Sopen02g029280 Solanum pennellii HOM05D004495 ORTHO05D005361 9.5e-06 55.5 57 49.1


User provided reference genes

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