Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib170G0807 Durio zibethinus HOM05D003342 ORTHO05D003861 4.4e-53 211.1 110 100.0
Thecc.09G217800 Theobroma cacao HOM05D003342 ORTHO05D003861 1.0e-33 146.7 86 83.7
COL.COLO4_10424 Corchorus olitorius HOM05D003342 ORTHO05D003861 3.0e-33 145.2 86 83.7
Duzib168G0297 Durio zibethinus HOM05D003342 ORTHO05D003861 7.3e-32 140.6 89 76.4
Gorai.010G127500 Gossypium raimondii HOM05D003342 ORTHO05D003861 5.2e-30 134.4 86 75.6
Gohir.A06G102400 Gossypium hirsutum HOM05D003342 ORTHO05D003861 2.0e-29 132.5 86 74.4
Gohir.D06G111900 Gossypium hirsutum HOM05D003342 ORTHO05D003861 2.0e-29 132.5 86 75.6
MBI08_g23102_MAGBIO Magnolia biondii HOM05D003342 ORTHO05D003861 1.1e-22 110.2 84 59.5
Haze_23011 Corylus avellana HOM05D003342 ORTHO05D003861 2.6e-21 105.5 86 62.8
Actinidia01840 Actinidia chinensis HOM05D003342 ORTHO05D003861 5.8e-21 104.4 84 58.3
Atru.chr3.2403 Acer truncatum HOM05D003342 ORTHO05D003861 1.7e-20 102.8 87 59.8
QL01p009789 Quercus lobata HOM05D003342 ORTHO05D003861 2.2e-20 102.4 85 61.2
TAR636G0676 Trochodendron aralioides HOM05D003342 ORTHO05D003861 2.2e-20 102.4 85 57.6
Ciclev10018144m.g Citrus clementina HOM05D003342 ORTHO05D003861 3.8e-20 101.7 84 60.7
Cc01_g03630 Coffea canephora HOM05D003342 ORTHO05D003861 1.4e-19 99.8 87 56.3
DCAR_002025 Daucus carota HOM05D003342 ORTHO05D003861 1.2e-18 96.7 78 56.4
Manes.03G090300 Manihot esculenta HOM05D003342 ORTHO05D003861 1.6e-18 96.3 91 56.0
Dinv36323 Davidia involucrata HOM05D003342 ORTHO05D003861 3.5e-18 95.1 85 55.3
Rhsim13G0227200 Rhododendron simsii HOM05D003342 ORTHO05D003861 3.5e-18 95.1 76 56.6
Actinidia06864 Actinidia chinensis HOM05D003342 ORTHO05D003861 6.0e-18 94.4 94 52.1
Aqoxy148s006 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 6.0e-18 94.4 87 54.0
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 6.0e-18 94.4 87 54.0
Prupe.6G014500 Prunus persica HOM05D003342 ORTHO05D003861 7.8e-18 94.0 77 59.7
ECA248G1312 Erigeron canadensis HOM05D003342 ORTHO05D003861 1.0e-17 93.6 85 52.9
Lj2C672T9 Lonicera japonica HOM05D003342 ORTHO05D003861 1.0e-17 93.6 76 60.5
Dinv08066 Davidia involucrata HOM05D003342 ORTHO05D003861 2.3e-17 92.4 77 58.4
Lju445A3G11 Lonicera japonica HOM05D003342 ORTHO05D003861 3.0e-17 92.0 88 54.5
Oeu013923.1 Olea europaea HOM05D003342 ORTHO05D003861 3.0e-17 92.0 85 52.9
ECA238G1888 Erigeron canadensis HOM05D003342 ORTHO05D003861 8.7e-17 90.5 86 54.7
Potri.003G214100 Populus trichocarpa HOM05D003342 ORTHO05D003861 8.7e-17 90.5 84 54.8
vmacro22155 Vaccinium macrocarpon HOM05D003342 ORTHO05D003861 1.1e-16 90.1 77 54.5
Lj1A446T11 Lonicera japonica HOM05D003342 ORTHO05D003861 1.5e-16 89.7 87 54.0
GSVIVG01025363001 Vitis vinifera HOM05D003342 ORTHO05D003861 1.5e-16 89.7 87 56.3
PSO384G1613 Papaver somniferum HOM05D003342 ORTHO05D003861 9.6e-16 87.0 88 52.3
Nitab4.5_0004288g0060 Nicotiana tabacum HOM05D003342 ORTHO05D003861 3.6e-15 85.1 77 55.8
Cpa.g.sc235.20 Carica papaya HOM05D003342 ORTHO05D003861 6.2e-15 84.3 90 47.8
Nn2g15685 Nelumbo nucifera HOM05D003342 ORTHO05D003861 6.2e-15 84.3 85 47.1
Nitab4.5_0001146g0050 Nicotiana tabacum HOM05D003342 ORTHO05D003861 6.2e-15 84.3 86 53.5
PSO339G6492 Papaver somniferum HOM05D003342 ORTHO05D003861 6.2e-15 84.3 88 52.3
RcHm_v2.0_Chr5g0080651 Rosa chinensis HOM05D003342 ORTHO05D003861 2.4e-14 82.4 83 50.6
FAN11G2771 Fragaria x ananassa HOM05D003342 ORTHO05D003861 3.1e-14 82.0 75 57.3
TWI34G0480 Tripterygium wilfordii HOM05D003342 ORTHO05D003861 3.1e-14 82.0 87 51.7
FAN25G0020 Fragaria x ananassa HOM05D003342 ORTHO05D003861 5.2e-14 81.3 75 56.0
HanXRQChr14g0452921 Helianthus annuus HOM05D003342 ORTHO05D003861 5.2e-14 81.3 80 53.8
Lsat_1_v5_gn_2_101261 Lactuca sativa HOM05D003342 ORTHO05D003861 5.2e-14 81.3 88 45.5
ATR0807G180 Amborella trichopoda HOM05D003342 ORTHO05D003861 9.0e-14 80.5 83 49.4
Migut.D00542 Erythranthe guttata HOM05D003342 ORTHO05D003861 1.2e-13 80.1 77 54.5
FAN16G2442 Fragaria x ananassa HOM05D003342 ORTHO05D003861 1.2e-13 80.1 75 56.0
FvH4_3g44280 Fragaria vesca HOM05D003342 ORTHO05D003861 3.4e-13 78.6 75 57.3
Glyma.08G361400 Glycine max HOM05D003342 ORTHO05D003861 3.4e-13 78.6 78 53.8
VMungo1383G2641 Vigna mungo HOM05D003342 ORTHO05D003861 4.4e-13 78.2 93 50.5
Ca_06526_v3 Cicer arietinum L. HOM05D003342 ORTHO05D003861 1.7e-12 76.3 87 48.3
Glyma.18G300300 Glycine max HOM05D003342 ORTHO05D003861 8.4e-12 73.9 78 51.3
PGSC0003DMG400032151 Solanum tuberosum HOM05D003342 ORTHO05D003861 1.1e-11 73.6 78 48.7
Zm00001eb232970 Zea mays HOM05D003342 ORTHO05D003861 1.1e-11 73.6 64 53.1
Eucgr.J00838 Eucalyptus grandis HOM05D003342 ORTHO05D003861 1.4e-11 73.2 75 46.7
FAN21G2328 Fragaria x ananassa HOM05D003342 ORTHO05D003861 1.4e-11 73.2 75 53.3
Phvul.008G002200 Phaseolus vulgaris HOM05D003342 ORTHO05D003861 1.9e-11 72.8 64 56.2
vmacro21752 Vaccinium macrocarpon HOM05D003342 ORTHO05D003861 3.2e-11 72.0 64 51.6
Psat6g142720 Pisum sativum HOM05D003342 ORTHO05D003861 4.2e-11 71.6 86 45.3
Lj1g0005480 Lotus japonicus HOM05D003342 ORTHO05D003861 9.3e-11 70.5 65 52.3
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 9.3e-11 70.5 62 58.1
arahy.Tifrunner.gnm1.ann1.8PZ4ND Arachis hypogaea HOM05D003342 ORTHO05D003861 2.7e-10 68.9 52 59.6
arahy.Tifrunner.gnm1.ann1.QA8QB9 Arachis hypogaea HOM05D003342 ORTHO05D003861 2.7e-10 68.9 52 59.6
Rhsim05G0030700 Rhododendron simsii HOM05D003342 ORTHO05D003861 3.5e-10 68.6 79 46.8
vmacro03498 Vaccinium macrocarpon HOM05D003342 ORTHO05D003861 3.5e-10 68.6 92 41.3
Cpa.g.sc135.41 Carica papaya HOM05D003342 ORTHO05D003861 6.0e-10 67.8 83 39.8
DCAR_004317 Daucus carota HOM05D003342 ORTHO05D003861 6.0e-10 67.8 87 46.0
Dinv03684 Davidia involucrata HOM05D003342 ORTHO05D003861 6.0e-10 67.8 64 51.6
Os02g0168400 Oryza sativa ssp. japonica HOM05D003342 ORTHO05D003861 6.0e-10 67.8 64 46.9
TPR.G15635 Trifolium pratense HOM05D003342 ORTHO05D003861 7.8e-10 67.4 89 47.2
Ciclev10014170m.g Citrus clementina HOM05D003342 ORTHO05D003861 1.7e-09 66.2 82 40.2
MELO3C021793.2 Cucumis melo HOM05D003342 ORTHO05D003861 2.3e-09 65.9 111 37.8
Medtr7g005940 Medicago truncatula HOM05D003342 ORTHO05D003861 3.0e-09 65.5 89 43.8
CSS0024223 Camellia sinensis var. sinensis HOM05D003342 ORTHO05D003861 3.9e-09 65.1 44 63.6
Lsat_1_v5_gn_5_36480 Lactuca sativa HOM05D003342 ORTHO05D003861 3.9e-09 65.1 67 44.8
Lalb_Chr18g0057761 Lupinus albus HOM05D003342 ORTHO05D003861 3.9e-09 65.1 64 45.3
MSTRG.16333 Avicennia marina HOM05D003342 ORTHO05D003861 5.1e-09 64.7 67 43.3
Nn7g38045 Nelumbo nucifera HOM05D003342 ORTHO05D003861 8.7e-09 63.9 74 41.9
Actinidia22376 Actinidia chinensis HOM05D003342 ORTHO05D003861 1.5e-08 63.2 83 45.8
ECA246G1944 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.9e-08 62.8 67 41.8
Lj2A354T56 Lonicera japonica HOM05D003342 ORTHO05D003861 1.9e-08 62.8 79 43.0
CiPaw.09G079700 Carya illinoinensis HOM05D003342 ORTHO05D003861 3.3e-08 62.0 64 43.8
MD11G1016300 Malus domestica HOM05D003342 ORTHO05D003861 3.3e-08 62.0 65 50.8
TAR626G1885 Trochodendron aralioides HOM05D003342 ORTHO05D003861 3.3e-08 62.0 84 40.5
Gohir.A10G045800 Gossypium hirsutum HOM05D003342 ORTHO05D003861 4.3e-08 61.6 75 40.0
Thecc.06G137300 Theobroma cacao HOM05D003342 ORTHO05D003861 4.3e-08 61.6 74 39.2
MBI18_g29067_MAGBIO Magnolia biondii HOM05D003342 ORTHO05D003861 5.6e-08 61.2 104 36.5
Cc09_g06760 Coffea canephora HOM05D003342 ORTHO05D003861 7.3e-08 60.8 73 42.5
Duzib160G0828 Durio zibethinus HOM05D003342 ORTHO05D003861 9.6e-08 60.5 64 42.2
Gorai.011G050100 Gossypium raimondii HOM05D003342 ORTHO05D003861 9.6e-08 60.5 75 38.7
Aqoxy1G01497 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 1.3e-07 60.1 73 45.2
CsaV3_1G042310 Cucumis sativus L. HOM05D003342 ORTHO05D003861 1.3e-07 60.1 77 40.3
COL.COLO4_30947 Corchorus olitorius HOM05D003342 ORTHO05D003861 2.1e-07 59.3 84 35.7
GSVIVG01026271001 Vitis vinifera HOM05D003342 ORTHO05D003861 2.1e-07 59.3 64 42.2
ClCG01G009040 Citrullus lanatus HOM05D003342 ORTHO05D003861 2.8e-07 58.9 103 34.0
Gohir.D10G047000 Gossypium hirsutum HOM05D003342 ORTHO05D003861 2.8e-07 58.9 67 38.8
CANSAT35G0314 Cannabis sativa HOM05D003342 ORTHO05D003861 3.6e-07 58.5 82 35.4
Gohir.A05G144100 Gossypium hirsutum HOM05D003342 ORTHO05D003861 3.6e-07 58.5 64 39.1
Gohir.D05G146500 Gossypium hirsutum HOM05D003342 ORTHO05D003861 3.6e-07 58.5 64 39.1
Gorai.009G150300 Gossypium raimondii HOM05D003342 ORTHO05D003861 3.6e-07 58.5 64 39.1
CiPaw.10G066100 Carya illinoinensis HOM05D003342 ORTHO05D003861 4.8e-07 58.2 78 39.7
PGR083G1483 Punica granatum HOM05D003342 ORTHO05D003861 6.2e-07 57.8 64 42.2
QL11p018280 Quercus lobata HOM05D003342 ORTHO05D003861 6.2e-07 57.8 75 40.0
Zm00001eb072830 Zea mays HOM05D003342 ORTHO05D003861 8.1e-07 57.4 65 46.2
Atru.chr10.595 Acer truncatum HOM05D003342 ORTHO05D003861 1.1e-06 57.0 68 42.6
Glyma.20G023000 Glycine max HOM05D003342 ORTHO05D003861 1.1e-06 57.0 89 34.8
Haze_06010 Corylus avellana HOM05D003342 ORTHO05D003861 1.4e-06 56.6 57 45.6
HanXRQChr12g0378181 Helianthus annuus HOM05D003342 ORTHO05D003861 1.4e-06 56.6 60 43.3
Potri.012G118600 Populus trichocarpa HOM05D003342 ORTHO05D003861 1.4e-06 56.6 78 41.0
Zm00001eb393640 Zea mays HOM05D003342 ORTHO05D037861 1.4e-06 56.6 84 36.9
RcHm_v2.0_Chr5g0019541 Rosa chinensis HOM05D003342 ORTHO05D003861 1.8e-06 56.2 63 39.7
SGA_v2.0_scaffold298G47665 Striga asiatica HOM05D003342 ORTHO05D003861 1.8e-06 56.2 60 43.3
Cfa000733 Carpinus fangiana HOM05D003342 ORTHO05D003861 2.4e-06 55.8 57 43.9
MELO3C015664.2 Cucumis melo HOM05D003342 ORTHO05D003861 2.4e-06 55.8 77 39.0
Manes.16G049421 Manihot esculenta HOM05D003342 ORTHO05D003861 2.4e-06 55.8 78 38.5
Medtr2g028940 Medicago truncatula HOM05D003342 ORTHO05D003861 2.4e-06 55.8 61 41.0
FAN16G3261 Fragaria x ananassa HOM05D003342 ORTHO05D003861 4.0e-06 55.1 65 38.5
FAN21G1449 Fragaria x ananassa HOM05D003342 ORTHO05D003861 4.0e-06 55.1 65 38.5
FAN25G3186 Fragaria x ananassa HOM05D003342 ORTHO05D003861 4.0e-06 55.1 65 38.5
Sabra15G0135500 Salix brachista HOM05D003342 ORTHO05D003861 4.0e-06 55.1 64 43.8
CsaV3_3G045920 Cucumis sativus L. HOM05D002223 ORTHO05D004187 5.3e-06 54.7 85 37.6
FvH4_3g11960 Fragaria vesca HOM05D003342 ORTHO05D003861 5.3e-06 54.7 63 38.1
TPR.G17511 Trifolium pratense HOM05D003342 ORTHO05D003861 5.3e-06 54.7 64 40.6
VMungo0540G0654 Vigna mungo HOM05D003342 ORTHO05D003861 5.3e-06 54.7 80 36.2
ClCG03G013770 Citrullus lanatus HOM05D003342 ORTHO05D003861 6.9e-06 54.3 68 42.6
SalBow8G3444 Salvia bowleyana HOM05D003342 ORTHO05D003861 6.9e-06 54.3 60 41.7


User provided reference genes

Program Settings