Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.0e-112 409.1 199 100.0
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.8e-68 263.1 258 57.4
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 2.4e-65 252.7 258 55.0
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.6e-61 238.4 280 50.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 7.9e-61 237.7 280 50.4
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 3.9e-60 235.3 280 50.4
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.0e-56 223.0 279 47.7
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.0e-55 218.4 275 48.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 2.5e-54 216.1 280 47.1
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 7.2e-54 214.5 273 46.9
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 7.2e-54 214.5 276 46.0
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 9.4e-54 214.2 280 46.1
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.2e-53 213.8 275 46.9
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 2.1e-53 213.0 280 45.7
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.6e-53 212.2 284 45.4
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 7.9e-53 211.1 277 45.8
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 7.9e-53 211.1 288 43.4
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 7.9e-53 211.1 277 45.5
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.4e-52 210.3 283 45.6
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.4e-52 210.3 280 45.4
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 3.9e-52 208.8 272 46.0
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 5.2e-52 208.4 281 44.5
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 5.2e-52 208.4 271 45.8
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 6.7e-52 208.0 277 45.5
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 6.7e-52 208.0 272 45.6
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 6.7e-52 208.0 280 45.0
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.1e-51 207.2 280 44.6
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.5e-51 206.8 277 45.5
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.5e-51 206.8 245 48.2
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 2.0e-51 206.5 272 45.6
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 2.6e-51 206.1 275 45.1
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.3e-51 205.7 275 45.1
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 3.3e-51 205.7 272 45.6
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 5.7e-51 204.9 276 43.5
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 7.4e-51 204.5 271 44.6
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 9.7e-51 204.1 276 43.1
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-50 203.8 277 44.4
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.3e-50 203.8 277 44.4
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.3e-50 203.8 264 44.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.3e-50 203.8 281 44.8
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.7e-50 203.4 272 44.9
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.7e-50 203.4 272 43.4
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.7e-50 203.4 281 43.8
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-50 203.0 277 44.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.2e-50 203.0 277 44.4
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 2.2e-50 203.0 274 45.3
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.8e-50 202.6 272 44.9
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 3.7e-50 202.2 271 44.6
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.8e-50 201.8 271 44.6
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 4.8e-50 201.8 274 44.2
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 4.8e-50 201.8 281 44.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.3e-50 201.4 278 45.3
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.3e-50 201.4 271 44.3
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.2e-50 201.1 272 44.5
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.1e-49 200.7 274 43.8
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.4e-49 200.3 271 43.9
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.8e-49 199.9 274 44.9
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.8e-49 199.9 271 44.3
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.8e-49 199.9 274 43.8
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.4e-49 199.5 271 44.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 2.4e-49 199.5 274 43.1
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 3.1e-49 199.1 272 44.1
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 4.1e-49 198.7 273 43.2
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 4.1e-49 198.7 274 43.4
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 5.3e-49 198.4 274 44.5
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 5.3e-49 198.4 274 44.5
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 7.0e-49 198.0 271 43.9
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 7.0e-49 198.0 278 43.2
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.2e-48 197.2 274 43.4
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.2e-48 197.2 280 43.2
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.6e-48 196.8 270 44.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 2.0e-48 196.4 270 44.1
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.6e-48 196.1 271 44.3
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.6e-48 196.1 274 42.3
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 4.5e-48 195.3 273 43.2
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 4.5e-48 195.3 278 41.7
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 5.9e-48 194.9 257 46.7
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 7.7e-48 194.5 272 43.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 7.7e-48 194.5 276 43.8
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 7.7e-48 194.5 270 44.1
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 7.7e-48 194.5 270 44.1
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.0e-47 194.1 270 43.7
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.2e-47 193.0 273 43.2
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.9e-47 192.6 276 42.0
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 8.5e-47 191.0 273 41.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 8.5e-47 191.0 268 44.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.9e-46 189.9 272 43.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.9e-46 189.9 272 43.0
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 4.2e-46 188.7 273 40.3
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 2.1e-45 186.4 304 40.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.4e-44 183.7 305 38.7
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.8e-44 183.3 307 38.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 6.7e-44 181.4 264 40.9
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.0e-43 179.9 274 39.4
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.0e-43 179.9 273 39.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 4.4e-43 178.7 273 39.9
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.7e-42 176.8 262 41.6
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.8e-41 173.3 271 39.5
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.1e-41 171.0 271 38.0
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 2.0e-40 169.9 242 43.4
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 8.5e-39 164.5 220 45.5
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.5e-38 163.7 219 45.7
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 4.2e-38 162.2 271 37.6
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 7.2e-38 161.4 225 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.4e-38 161.0 271 37.3
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 8.0e-37 157.9 164 51.8
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.0e-36 156.0 223 40.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 4.0e-36 155.6 386 30.8
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 5.7e-35 151.8 233 41.2
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 5.7e-35 151.8 241 41.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.4e-33 147.1 277 34.3
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.8e-33 146.7 95 72.6
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 9.1e-33 144.4 270 36.7
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.0e-31 141.0 236 39.8
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 2.2e-31 139.8 90 72.2
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 2.2e-31 139.8 266 34.6
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.9e-31 139.4 95 70.5
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 3.8e-31 139.0 94 71.3
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.9e-30 136.7 92 68.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 3.2e-30 136.0 165 47.3
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 4.2e-30 135.6 271 32.5
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 5.5e-30 135.2 97 66.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 7.2e-30 134.8 89 70.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.6e-29 133.7 190 45.3
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 2.1e-29 133.3 79 79.7
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.8e-29 132.9 99 65.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 3.0e-28 129.4 271 29.9
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 5.2e-28 128.6 288 33.0
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 5.7e-27 125.2 227 39.6
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.3e-26 124.0 156 46.2
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 9.2e-25 117.9 195 40.5
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 2.7e-24 116.3 182 42.3
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.0e-20 104.4 92 58.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.4e-17 94.0 89 51.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 2.4e-17 93.2 271 27.7
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 3.2e-17 92.8 89 51.7
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 8.6e-15 84.7 87 55.2
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.2e-12 75.5 80 52.5
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 8.3e-10 68.2 52 67.3
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 6.0e-08 62.0 51 62.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 1.3e-07 60.8 56 53.6
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.3e-07 60.1 46 67.4
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.1e-06 57.8 73 50.7
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.1e-06 57.8 73 46.6
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.1e-06 57.8 56 51.8
Hund03807 Selenicereus undatus HOM05D005146 ORTHO05D383678 1.9e-06 57.0 37 67.6


User provided reference genes

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