Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 5.6e-74 280.8 137 100.0
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 2.0e-26 122.9 124 56.5
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 2.0e-26 122.9 113 60.2
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 8.2e-25 117.5 113 60.2
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.1e-24 117.1 124 55.6
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 1.6e-23 113.2 92 63.0
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 2.0e-23 112.8 93 66.7
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 5.9e-23 111.3 141 49.6
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.4e-19 100.1 91 59.3
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 2.6e-18 95.9 93 59.1
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 2.4e-16 89.4 92 54.3
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 3.1e-16 89.0 92 54.3
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 4.1e-16 88.6 92 47.8
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 7.0e-16 87.8 95 52.6
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 9.1e-16 87.4 92 51.1
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 1.2e-15 87.0 92 54.3
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.0e-15 86.3 92 48.9
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 2.0e-15 86.3 92 48.9
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 2.0e-15 86.3 92 46.7
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 5.9e-15 84.7 107 45.8
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.0e-14 84.0 92 52.2
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.3e-14 83.6 92 50.0
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 1.7e-14 83.2 92 48.9
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 1.7e-14 83.2 134 40.3
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 2.2e-14 82.8 96 52.1
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 2.9e-14 82.4 92 48.9
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 3.8e-14 82.0 90 48.9
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 3.8e-14 82.0 93 49.5
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 3.8e-14 82.0 93 51.6
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 3.8e-14 82.0 92 48.9
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 3.8e-14 82.0 92 51.1
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 3.8e-14 82.0 92 50.0
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.0e-14 81.6 115 44.3
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.0e-14 81.6 115 46.1
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 5.0e-14 81.6 92 51.1
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 5.0e-14 81.6 92 51.1
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 5.0e-14 81.6 92 45.7
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 6.5e-14 81.3 92 47.8
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 1.1e-13 80.5 92 50.0
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 1.9e-13 79.7 92 48.9
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 2.5e-13 79.3 90 46.7
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 2.5e-13 79.3 109 44.0
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 2.5e-13 79.3 113 42.5
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 2.5e-13 79.3 92 46.7
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 2.5e-13 79.3 92 45.7
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 4.2e-13 78.6 92 45.7
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 4.2e-13 78.6 92 46.7
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 7.2e-13 77.8 92 46.7
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 7.2e-13 77.8 92 46.7
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 7.2e-13 77.8 92 46.7
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 7.2e-13 77.8 92 46.7
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 1.2e-12 77.0 92 44.6
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 1.2e-12 77.0 92 44.6
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 1.6e-12 76.6 92 46.7
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 1.6e-12 76.6 92 46.7
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.6e-12 76.6 113 41.6
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 4.7e-12 75.1 92 45.7
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 4.7e-12 75.1 137 38.0
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 6.1e-12 74.7 93 48.4
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 6.1e-12 74.7 94 46.8
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 1.0e-11 73.9 92 48.9
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 1.4e-11 73.6 115 40.9
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 1.4e-11 73.6 92 43.5
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 1.8e-11 73.2 119 42.0
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 1.8e-11 73.2 97 47.4
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 1.8e-11 73.2 92 46.7
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 2.3e-11 72.8 209 29.2
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 3.0e-11 72.4 119 41.2
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 4.0e-11 72.0 88 46.6
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 5.2e-11 71.6 97 45.4
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 6.8e-11 71.2 92 44.6
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 1.2e-10 70.5 93 44.1
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 2.6e-10 69.3 92 42.4
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 3.4e-10 68.9 94 47.9
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 7.5e-10 67.8 92 41.3
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 9.8e-10 67.4 133 35.3
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 9.8e-10 67.4 114 42.1
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 1.3e-09 67.0 86 47.7
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 1.3e-09 67.0 86 47.7
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 1.3e-09 67.0 85 45.9
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 2.8e-09 65.9 93 44.1
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 3.7e-09 65.5 92 42.4
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 3.7e-09 65.5 89 41.6
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 4.8e-09 65.1 129 34.9
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 4.8e-09 65.1 117 39.3
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 5.4e-08 61.6 92 40.2
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 7.0e-08 61.2 108 40.7
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 9.1e-08 60.8 89 41.6
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 1.2e-07 60.5 92 38.0
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 2.7e-07 59.3 90 38.9
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 2.7e-07 59.3 88 39.8
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.7e-07 59.3 92 38.0


User provided reference genes

Program Settings