Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 6.8e-60 233.8 118 100.0
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.7e-48 195.3 117 83.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.0e-47 193.4 117 82.9
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 4.3e-46 188.0 116 83.6
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 4.7e-45 184.5 116 75.0
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 6.8e-44 180.6 116 75.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 6.8e-44 180.6 118 78.8
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.0e-43 179.1 117 73.5
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 3.7e-42 174.9 118 73.7
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.9e-42 174.5 117 75.2
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.9e-42 174.5 119 74.8
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.1e-41 173.3 117 74.4
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-41 173.3 118 75.4
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 2.4e-41 172.2 118 73.7
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.1e-41 171.4 117 72.6
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 9.2e-41 170.2 118 72.0
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 9.2e-41 170.2 117 74.4
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 9.2e-41 170.2 117 72.6
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.1e-40 169.1 117 70.9
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.7e-40 168.7 117 72.6
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.7e-40 168.7 112 68.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 3.5e-40 168.3 116 72.4
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 7.8e-40 167.2 117 72.6
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.3e-39 166.4 117 71.8
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.3e-39 166.4 119 71.4
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.3e-39 166.4 119 71.4
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.0e-39 165.2 110 69.1
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 6.6e-39 164.1 120 69.2
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 8.6e-39 163.7 118 70.3
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 8.6e-39 163.7 119 69.7
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-38 163.3 119 69.7
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.5e-38 162.9 125 66.4
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.5e-38 162.9 120 70.8
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.5e-38 162.9 124 65.3
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.9e-38 162.5 120 68.3
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.5e-38 162.2 123 65.9
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.3e-38 161.8 119 68.9
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 5.6e-38 161.0 119 68.1
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 7.3e-38 160.6 115 69.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 7.3e-38 160.6 120 70.0
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.3e-38 160.6 118 67.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 2.8e-37 158.7 118 66.9
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.8e-37 158.7 118 66.9
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.7e-37 157.9 118 66.9
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.1e-36 156.8 112 67.0
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.4e-36 156.4 113 68.1
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.3e-36 155.6 118 66.9
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 6.8e-36 154.1 112 68.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.5e-35 152.9 119 63.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.5e-35 152.9 118 68.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.6e-35 152.1 112 68.8
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 2.6e-35 152.1 119 70.6
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 5.8e-35 151.0 114 66.7
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 9.9e-35 150.2 121 62.0
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 9.9e-35 150.2 108 69.4
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 9.9e-35 150.2 118 64.4
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.3e-34 149.8 122 68.0
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.2e-34 149.1 120 60.8
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.9e-34 148.7 116 68.1
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.9e-34 148.7 114 63.2
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.4e-34 147.5 117 64.1
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 6.4e-34 147.5 117 66.7
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 8.4e-34 147.1 121 60.3
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 8.4e-34 147.1 119 62.2
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 8.4e-34 147.1 123 62.6
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 8.4e-34 147.1 117 66.7
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.4e-33 146.4 126 61.9
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.9e-33 146.0 118 66.1
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.9e-33 146.0 118 66.1
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.4e-33 145.6 123 65.9
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.4e-33 145.6 121 61.2
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 4.1e-33 144.8 117 63.2
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 4.1e-33 144.8 119 62.2
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 5.4e-33 144.4 119 61.3
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 5.4e-33 144.4 119 61.3
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 5.4e-33 144.4 115 60.9
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.4e-33 144.4 121 62.8
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 5.4e-33 144.4 119 61.3
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.4e-33 144.4 126 61.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 5.4e-33 144.4 126 61.1
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 7.1e-33 144.1 112 64.3
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 9.2e-33 143.7 119 62.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 9.2e-33 143.7 112 64.3
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.2e-32 143.3 119 61.3
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.1e-32 142.5 118 60.2
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.1e-32 142.5 120 60.0
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.5e-32 141.7 114 63.2
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 3.5e-32 141.7 121 62.8
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 4.6e-32 141.4 122 63.9
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.0e-31 140.2 117 63.2
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-31 140.2 118 60.2
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.3e-31 139.8 112 63.4
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 3.0e-31 138.7 119 58.0
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.9e-31 138.3 113 64.6
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 5.1e-31 137.9 117 57.3
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 8.6e-31 137.1 116 56.0
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 8.6e-31 137.1 113 61.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 8.6e-31 137.1 119 60.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.1e-30 136.7 120 63.3
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.3e-30 135.2 116 56.0
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 4.3e-30 134.8 118 61.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 9.6e-30 133.7 110 55.5
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 1.6e-29 132.9 112 58.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 2.1e-29 132.5 114 54.4
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.1e-29 132.5 116 60.3
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.8e-29 132.1 84 72.6
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 6.2e-29 131.0 112 58.0
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.1e-28 130.2 115 55.7
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.8e-28 129.4 116 58.6
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.4e-28 129.0 113 56.6
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.4e-28 129.0 115 57.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.4e-28 129.0 115 57.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.4e-28 129.0 114 52.6
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.1e-28 128.6 123 53.7
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 3.1e-28 128.6 116 53.4
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 4.0e-28 128.3 117 56.4
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.0e-28 128.3 116 51.7
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.2e-28 127.9 116 51.7
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 6.9e-28 127.5 130 49.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 8.9e-28 127.1 119 54.6
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.2e-27 126.7 114 57.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.0e-27 125.9 113 55.8
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 7.6e-27 124.0 116 55.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 7.6e-27 124.0 111 53.2
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 9.9e-27 123.6 118 51.7
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 4.9e-26 121.3 114 48.2
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 6.4e-26 120.9 119 52.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 8.4e-26 120.6 107 60.7
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.4e-26 120.6 113 54.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.2e-24 116.7 113 51.3
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.5e-24 115.2 114 49.1
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.3e-23 112.5 117 54.7
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 5.1e-23 111.3 113 46.9
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 5.1e-23 111.3 116 51.7
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.8e-21 104.8 102 47.1
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.1e-16 89.4 57 77.2
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 6.0e-16 87.8 93 52.7
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 3.7e-13 78.6 47 83.0
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 6.9e-12 74.3 47 74.5
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.8e-11 71.2 81 49.4
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 3.8e-10 68.6 47 63.8
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.9e-09 66.2 49 65.3
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 5.5e-09 64.7 46 65.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 5.5e-09 64.7 45 66.7
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 2.1e-08 62.8 42 71.4
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.5e-06 56.6 83 36.1
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 4.3e-06 55.1 47 57.4


User provided reference genes

Program Settings