Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.3e-141 505.0 250 100.0
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.0e-134 481.5 250 95.6
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 4.0e-134 481.5 250 95.6
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.2e-133 479.9 250 95.2
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 3.2e-128 461.8 250 92.4
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.0e-125 452.6 249 91.2
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.2e-124 449.1 246 90.2
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 4.9e-124 448.0 244 90.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.4e-123 446.4 244 89.8
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 3.1e-123 445.3 251 88.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 3.1e-123 445.3 251 88.4
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 9.2e-123 443.7 244 89.3
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.2e-122 443.4 244 88.9
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.6e-122 443.0 251 88.0
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.0e-122 442.6 251 87.3
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.7e-122 442.2 247 87.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 2.7e-122 442.2 247 87.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 4.5e-122 441.4 248 87.5
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 5.9e-122 441.0 249 86.7
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 5.9e-122 441.0 244 88.5
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.0e-121 440.3 251 86.5
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.3e-121 439.9 245 87.8
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.9e-121 438.7 249 86.7
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.9e-121 438.7 251 86.1
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 3.8e-121 438.3 244 87.7
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 3.8e-121 438.3 245 87.3
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 5.0e-121 438.0 251 86.5
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 5.0e-121 438.0 248 88.7
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 5.0e-121 438.0 248 87.9
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 5.0e-121 438.0 251 86.1
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 6.6e-121 437.6 245 87.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 6.6e-121 437.6 251 86.5
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 8.6e-121 437.2 244 86.5
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.1e-120 436.8 244 88.5
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.1e-120 436.8 247 86.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.5e-120 436.4 248 88.3
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.9e-120 436.0 244 87.3
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 3.3e-120 435.3 244 87.7
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 5.6e-120 434.5 251 85.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.6e-120 434.5 244 88.1
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 5.6e-120 434.5 244 87.7
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 9.5e-120 433.7 249 85.1
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.2e-119 433.3 245 86.9
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.6e-119 433.0 259 83.8
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.8e-119 432.2 256 84.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.8e-119 432.2 251 85.7
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 2.8e-119 432.2 244 86.9
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 2.8e-119 432.2 244 87.3
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.8e-119 432.2 249 84.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.6e-119 431.8 249 84.7
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 6.1e-119 431.0 249 85.9
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 6.1e-119 431.0 249 84.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 8.0e-119 430.6 248 85.1
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.0e-118 430.3 251 84.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.4e-118 429.9 245 84.5
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 3.0e-118 428.7 244 86.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 3.0e-118 428.7 249 85.5
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.0e-118 428.7 251 84.1
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 3.0e-118 428.7 244 86.5
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 4.0e-118 428.3 251 83.3
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 4.0e-118 428.3 251 83.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.0e-118 428.3 248 85.1
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 8.9e-118 427.2 249 84.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.5e-117 426.4 251 83.3
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.5e-117 426.4 251 83.3
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 2.0e-117 426.0 249 83.5
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.0e-117 426.0 251 83.7
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 83.3
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 83.3
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 82.9
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 9.8e-117 423.7 251 82.9
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 9.8e-117 423.7 251 82.9
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.3e-116 423.3 251 82.5
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.3e-116 423.3 251 82.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 2.2e-116 422.5 244 85.2
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 2.9e-116 422.2 291 76.3
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.4e-116 421.0 234 87.2
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.1e-115 420.2 265 79.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.2e-115 418.7 250 84.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 4.1e-115 418.3 244 84.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 9.2e-115 417.2 251 82.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.2e-114 416.8 243 84.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.6e-114 416.4 249 82.7
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 5.9e-114 414.5 270 78.1
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.3e-112 408.7 248 80.2
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.1e-111 406.0 250 81.6
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.6e-111 405.2 298 69.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 4.7e-111 404.8 233 85.4
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.0e-110 403.7 233 84.1
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.9e-108 395.6 249 79.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.7e-108 395.2 249 78.7
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 9.2e-107 390.6 249 77.9
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.6e-105 384.4 244 75.4
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 7.3e-104 380.9 252 77.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.6e-103 379.8 359 57.1
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.3e-100 370.2 243 75.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.7e-100 369.8 223 80.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.7e-98 362.5 242 70.2
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 4.6e-98 361.7 212 85.4
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.7e-97 359.8 246 74.8
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.9e-96 356.3 239 73.2
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.6e-95 353.2 244 73.4
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 5.2e-94 348.2 250 74.0
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.0e-93 346.3 238 73.5
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.3e-88 328.9 238 68.1
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.1e-86 322.4 194 83.0
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.9e-86 320.9 186 84.4
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 4.9e-84 315.1 181 84.5
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 8.7e-81 304.3 318 54.7
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.5e-80 302.8 186 82.3
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.2e-74 283.9 211 73.5
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 6.7e-73 278.1 207 71.0
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.1e-72 277.3 151 90.1
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 3.1e-70 269.2 185 72.4
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.5e-69 266.9 240 53.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 4.3e-64 248.8 151 79.5
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 4.3e-64 248.8 250 58.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 4.5e-61 238.8 249 49.4
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 9.6e-56 221.1 195 58.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.3e-48 196.1 99 94.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 4.3e-48 195.7 249 46.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.3e-48 195.7 119 79.8
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.3e-44 184.1 112 77.7
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.7e-40 168.7 94 85.1
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.1e-38 164.5 94 83.0
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.6e-37 159.8 242 36.0
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 7.2e-35 151.8 158 57.6
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-34 151.0 115 66.1
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 6.7e-33 145.2 94 75.5
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.2e-27 126.3 122 59.0
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.8e-17 94.0 59 71.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 6.8e-17 92.0 98 52.0
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.8e-14 84.0 137 43.1
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.4e-14 83.6 55 76.4
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 2.4e-14 83.6 44 84.1
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.1e-11 74.7 56 66.1
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 5.7e-08 62.4 55 63.6


User provided reference genes

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