Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 9.7e-259 896.3 469 100.0
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.0e-231 806.6 469 88.9
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.0e-228 796.6 469 86.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.0e-228 796.6 469 86.6
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 5.7e-227 790.8 469 86.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.3e-226 789.6 467 84.4
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.4e-185 652.5 469 69.9
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.2e-184 650.2 446 71.7
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 2.1e-184 649.4 463 71.1
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.9e-182 642.9 464 69.2
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 8.1e-181 637.5 465 67.7
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 4.4e-179 631.7 468 66.9
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 9.9e-179 630.6 464 69.0
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 2.9e-178 629.0 463 68.5
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 5.4e-177 624.8 444 68.9
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.3e-175 620.2 515 63.5
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.7e-175 619.8 464 67.0
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.1e-175 618.2 465 66.7
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 9.6e-174 614.0 464 66.4
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.7e-170 603.2 467 63.6
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 2.9e-170 602.4 446 67.9
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 2.9e-170 602.4 467 64.7
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.4e-169 600.1 465 65.6
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.7e-168 595.9 470 64.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 6.0e-168 594.7 449 64.4
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 6.7e-167 591.3 445 65.8
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 7.4e-166 587.8 466 62.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 7.4e-166 587.8 448 64.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 9.6e-166 587.4 445 65.4
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.1e-165 586.3 450 64.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.1e-164 583.9 452 64.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.5e-163 580.1 447 64.4
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 2.9e-162 575.9 464 62.1
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 4.9e-162 575.1 464 60.3
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 6.4e-162 574.7 448 64.3
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.1e-161 573.9 464 61.9
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.3e-161 570.9 448 64.1
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.6e-160 568.5 464 61.6
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.0e-160 568.2 448 63.8
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 6.7e-159 564.7 464 60.1
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.5e-158 563.5 464 60.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.5e-158 563.5 467 61.9
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 5.6e-158 561.6 448 62.3
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 5.6e-158 561.6 453 62.3
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.3e-157 560.5 465 60.9
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 8.2e-157 557.8 466 60.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.4e-156 557.0 449 61.5
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.8e-156 556.6 466 61.4
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.5e-155 553.5 463 59.6
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.8e-154 548.9 446 61.2
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.6e-152 543.5 484 58.5
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.1e-152 543.1 432 63.2
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.7e-152 542.7 444 60.4
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 3.5e-152 542.3 465 59.4
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.6e-152 542.0 432 63.2
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 2.3e-151 539.7 449 59.0
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 3.9e-151 538.9 448 59.4
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.9e-151 538.9 451 59.6
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 8.7e-151 537.7 450 58.7
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 8.7e-151 537.7 465 59.1
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.9e-150 536.6 452 60.2
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.5e-150 536.2 452 60.2
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.3e-150 535.8 452 60.0
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.6e-149 533.5 452 58.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-149 533.1 452 59.7
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 2.2e-149 533.1 465 58.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.8e-149 532.7 452 60.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 6.3e-149 531.6 448 59.2
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 8.2e-149 531.2 446 59.0
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 1.1e-148 530.8 448 58.9
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.4e-148 529.6 447 58.8
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-147 527.3 455 58.7
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 2.6e-147 526.2 448 58.9
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 3.4e-147 525.8 449 59.0
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 5.9e-147 525.0 446 59.4
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.3e-146 523.9 451 59.0
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.7e-146 523.5 468 57.3
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 2.2e-146 523.1 446 57.8
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.2e-146 523.1 449 58.1
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 6.5e-146 521.5 451 59.0
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 8.5e-146 521.2 468 56.6
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 7.2e-145 518.1 447 56.4
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.0e-143 514.2 445 58.9
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 5.7e-142 508.4 440 58.4
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 3.7e-141 505.8 445 56.9
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 8.2e-141 504.6 448 57.6
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 3.1e-140 502.7 450 57.6
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.2e-139 500.7 451 58.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 3.3e-134 482.6 429 57.1
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.8e-133 479.6 452 53.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 3.1e-132 476.1 423 55.8
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.9e-131 471.9 427 56.2
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 7.7e-131 471.5 470 51.9
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.5e-129 465.3 427 55.3
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.6e-128 462.6 419 56.8
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 5.7e-126 455.3 415 56.4
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 7.4e-126 454.9 450 52.9
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 7.7e-123 444.9 459 50.8
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-122 444.1 459 50.8
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.5e-121 440.7 454 51.1
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.7e-120 435.6 438 52.5
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.5e-118 430.6 443 49.7
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 5.5e-113 412.1 455 46.8
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.6e-107 394.0 452 47.8
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 5.0e-98 362.5 422 43.1
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.3e-95 353.6 278 59.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 9.8e-94 348.2 376 50.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 9.8e-94 348.2 376 50.0
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.2e-93 347.1 284 60.6
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 3.0e-90 336.7 363 51.8
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 9.8e-86 321.6 444 40.5
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 2.4e-84 317.0 479 37.8
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 5.1e-74 282.7 511 35.4
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 4.3e-65 253.1 326 46.6
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 2.4e-60 237.3 475 31.6
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 3.0e-58 230.3 511 30.7
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.7e-43 180.6 194 51.5
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.5e-43 180.3 363 34.7
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 8.7e-42 175.6 477 26.8
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 9.0e-39 165.6 162 51.2
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.4e-38 163.7 162 50.6
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 2.9e-37 160.6 117 65.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-37 160.2 127 58.3
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-37 160.2 127 58.3
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.9e-36 157.9 124 58.9
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.8e-34 151.4 230 38.3
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.9e-33 147.9 128 59.4
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.5e-33 147.5 399 28.1
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.1e-31 142.1 105 60.0
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 3.2e-28 130.6 217 39.2
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.7e-24 118.2 442 21.9
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 3.8e-21 107.1 275 27.3
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 2.6e-17 94.4 121 39.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 7.0e-15 86.3 165 30.3
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.9e-14 83.2 69 59.4
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 9.4e-12 75.9 38 86.8
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 2.1e-11 74.7 85 48.2
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.7e-11 74.3 67 56.7
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.7e-11 73.6 39 79.5
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 5.2e-10 70.1 73 49.3


User provided reference genes

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