Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 6.3e-123 444.1 223 100.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 6.7e-109 397.5 223 89.2
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 9.7e-108 393.7 222 90.1
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.7e-102 375.6 224 82.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.9e-101 371.7 223 84.3
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 6.7e-101 370.9 221 81.4
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.0e-100 369.4 223 83.9
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.8e-99 364.8 222 81.5
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.3e-99 364.4 223 81.2
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.3e-99 364.4 226 80.1
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 8.2e-99 364.0 223 83.0
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.1e-98 363.6 223 80.3
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.1e-98 363.6 223 80.7
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.4e-98 362.5 224 81.2
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.6e-97 359.8 231 78.4
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.7e-96 356.3 224 79.0
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 1.7e-96 356.3 223 79.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 3.8e-96 355.1 325 61.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.0e-96 354.8 218 78.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 5.0e-96 354.8 230 76.5
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 6.5e-96 354.4 224 78.6
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.5e-96 354.4 224 78.6
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.1e-95 353.6 226 77.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.5e-95 353.2 225 76.9
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.9e-95 352.8 224 78.1
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.5e-95 351.3 224 78.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 7.2e-95 350.9 226 78.8
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 9.4e-95 350.5 226 76.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.0e-93 347.1 211 80.1
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.3e-93 345.9 225 77.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 4.0e-93 345.1 225 77.3
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 5.2e-93 344.7 212 81.1
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.2e-93 344.7 225 75.6
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.2e-93 344.7 225 75.6
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 6.7e-93 344.4 221 76.9
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 6.7e-93 344.4 224 76.3
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.5e-92 343.2 224 77.2
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.4e-92 341.7 225 75.1
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 4.4e-92 341.7 225 75.1
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 5.7e-92 341.3 223 77.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 7.5e-92 340.9 250 71.6
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.7e-91 339.7 217 76.5
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.7e-91 339.7 224 75.9
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.2e-91 339.3 221 75.1
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 8.2e-91 337.4 217 77.0
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 8.2e-91 337.4 218 75.2
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.4e-90 336.7 228 75.9
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.8e-90 336.3 219 74.4
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.1e-90 335.5 221 74.7
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 3.1e-90 335.5 227 74.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.6e-89 333.2 227 72.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.6e-89 333.2 224 74.6
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.6e-89 333.2 224 74.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.7e-89 332.4 213 77.5
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 7.7e-89 330.9 218 74.3
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.0e-88 330.5 225 75.1
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.3e-88 330.1 225 71.6
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.9e-88 328.9 227 74.0
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.8e-88 328.6 227 70.9
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 5.0e-88 328.2 224 72.3
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 5.0e-88 328.2 226 70.8
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 8.5e-88 327.4 229 71.6
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 1.1e-87 327.0 225 70.7
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.5e-87 326.6 224 71.9
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.9e-87 326.2 225 71.6
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.5e-87 325.9 219 73.1
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 2.5e-87 325.9 225 71.6
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.2e-87 325.5 218 73.9
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 4.2e-87 325.1 225 71.6
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 5.5e-87 324.7 220 71.4
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 7.2e-87 324.3 229 72.5
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.2e-86 323.6 225 71.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.2e-86 323.6 225 71.1
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.6e-86 322.0 220 71.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 3.6e-86 322.0 224 73.2
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.6e-86 322.0 232 67.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.1e-86 321.2 220 72.3
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 8.0e-86 320.9 218 70.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 8.0e-86 320.9 228 72.4
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.4e-85 320.1 223 71.7
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.8e-85 319.7 226 69.9
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 225 68.9
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 2.3e-85 319.3 225 70.2
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.0e-85 318.9 224 68.3
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.0e-85 318.5 218 73.9
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 8.8e-85 317.4 219 72.1
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.0e-84 316.2 227 67.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.0e-84 316.2 211 70.6
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 2.0e-84 316.2 222 68.0
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.4e-84 315.1 219 72.1
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.7e-83 313.2 219 70.8
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.7e-83 313.2 232 66.4
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.7e-83 313.2 232 66.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.8e-83 311.6 220 68.6
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 2.4e-82 309.3 221 67.9
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.1e-82 308.9 229 68.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 3.1e-82 308.9 223 69.5
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 4.1e-82 308.5 216 69.4
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.4e-82 308.1 219 70.8
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.4e-82 308.1 222 67.6
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 5.4e-82 308.1 222 67.6
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 9.1e-82 307.4 223 67.3
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 219 70.3
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 5.0e-80 301.6 225 68.0
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 5.0e-80 301.6 220 68.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.5e-79 300.1 223 65.9
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.5e-79 299.3 219 67.1
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.5e-79 299.3 225 68.9
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.5e-79 298.1 219 66.7
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 9.4e-79 297.4 215 66.5
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 6.1e-78 294.7 220 64.5
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 3.0e-77 292.4 357 47.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 5.2e-77 291.6 225 67.6
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 6.8e-77 291.2 227 65.2
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 4.9e-75 285.0 222 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 8.3e-75 284.3 218 65.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.6e-73 280.0 217 62.7
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.6e-73 280.0 307 51.1
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 8.6e-72 274.2 215 61.9
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 8.0e-70 267.7 218 58.7
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.0e-69 265.8 217 58.1
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 5.2e-69 265.0 171 78.4
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 3.0e-64 249.2 222 57.2
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 6.6e-64 248.1 149 80.5
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 4.7e-62 241.9 153 75.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 6.8e-61 238.0 152 77.0
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 6.8e-61 238.0 139 79.9
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.6e-57 226.9 176 67.0
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.6e-57 225.3 152 73.7
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 5.8e-52 208.4 221 52.5
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 7.5e-52 208.0 162 63.0
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.1e-50 202.2 127 78.7
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 2.7e-49 199.5 196 56.6
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 4.6e-49 198.7 130 75.4
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 3.9e-48 195.7 117 83.8
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 4.4e-44 182.2 117 77.8
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.9e-43 179.5 106 82.1
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 4.9e-43 178.7 99 87.9
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.9e-43 178.7 112 73.2
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.2e-41 174.1 111 75.7
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.2e-41 174.1 111 75.7
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 9.6e-39 164.5 95 83.2
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.8e-35 152.5 121 65.3
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.4e-34 150.6 144 54.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 3.5e-33 146.0 191 38.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.4e-29 134.0 84 71.4
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 9.0e-29 131.3 107 64.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.4e-26 123.2 128 56.2
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 6.9e-21 105.1 81 65.4
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.9e-15 87.0 57 71.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.1e-14 81.6 77 55.8
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 3.1e-13 79.7 47 80.9
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 2.2e-11 73.6 171 33.3
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.9e-09 65.1 48 64.6


User provided reference genes

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