Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1534.2 819 100.0
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1398.3 819 91.2
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1394.0 816 91.1
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1390.9 816 90.9
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1389.4 816 90.9
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 0.0e+00 1375.9 819 89.7
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1222.2 822 78.8
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1218.0 822 79.0
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1211.1 822 77.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1193.7 822 76.3
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1191.4 858 74.4
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1189.9 819 77.2
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1186.4 822 76.0
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1180.6 821 75.6
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1176.0 821 75.3
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1174.8 821 75.8
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1171.8 821 75.4
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1169.1 820 75.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1162.9 828 74.4
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1158.3 817 76.0
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1143.3 824 73.4
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 0.0e+00 1140.9 822 74.9
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1137.9 822 74.3
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 0.0e+00 1125.2 786 75.6
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1121.3 787 76.1
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1120.1 822 72.9
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 0.0e+00 1117.4 822 71.5
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1110.5 821 72.4
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 0.0e+00 1102.4 821 72.1
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1101.7 821 71.3
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1099.0 822 72.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1097.0 819 71.7
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 0.0e+00 1092.8 895 67.9
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 0.0e+00 1089.3 818 69.8
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1088.9 845 69.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 0.0e+00 1088.2 819 71.2
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1087.4 822 71.0
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1086.2 819 70.8
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1082.4 822 70.9
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1082.4 820 70.2
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 0.0e+00 1082.0 818 69.8
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1079.7 822 70.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 820 69.9
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 825 70.4
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 820 70.5
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 819 70.5
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 817 70.5
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 819 69.7
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 2.2e-311 1072.0 818 69.2
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.9e-310 1068.9 752 75.1
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 2.5e-310 1068.5 819 70.0
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.2e-309 1066.2 819 68.4
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 8.0e-309 1063.5 819 68.7
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 1.8e-308 1062.4 818 68.1
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 4.0e-308 1061.2 819 68.1
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 4.0e-308 1061.2 843 68.1
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.2e-307 1059.7 820 70.0
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.4e-307 1058.1 819 68.1
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.8e-307 1056.6 819 68.5
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 2.2e-306 1055.4 817 68.8
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 3.7e-306 1054.7 819 68.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 6.3e-306 1053.9 822 69.0
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 8.3e-306 1053.5 818 68.7
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.1e-305 1053.1 814 69.2
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.8e-305 1052.4 819 68.3
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 5.4e-305 1050.8 819 67.9
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 5.4e-305 1050.8 820 67.8
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 2.3e-303 1045.4 834 68.9
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 3.8e-303 1044.6 757 73.7
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.5e-302 1042.7 830 67.7
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 4.2e-302 1041.2 818 67.5
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 8.0e-301 1036.9 835 66.5
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.0e-300 1036.6 843 66.7
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 5.2e-300 1034.2 823 67.3
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.4e-297 1024.2 750 72.1
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.2e-296 1023.1 862 64.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.1e-294 1016.5 825 67.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 3.3e-294 1015.0 816 67.2
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 6.1e-293 1010.7 817 67.3
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 2.0e-288 995.7 812 66.0
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 3.5e-288 995.0 818 66.1
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.3e-286 988.4 919 60.4
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.6e-285 986.1 818 65.9
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 6.2e-285 984.2 859 63.9
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 7.5e-283 977.2 829 64.8
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.4e-281 973.0 818 64.8
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.5e-278 963.0 819 64.6
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.7e-269 931.4 819 62.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.1e-254 883.6 825 58.3
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 4.3e-254 881.7 821 62.2
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 4.8e-253 878.2 827 57.9
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.1e-241 840.5 672 67.1
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 7.4e-238 827.8 666 67.1
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.5e-235 820.1 818 55.9
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 5.7e-230 801.6 868 52.1
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.1e-223 778.5 594 70.2
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-185 654.1 622 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.7e-173 614.0 766 46.3
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 9.2e-172 608.2 542 62.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 5.0e-170 602.4 844 44.3
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.5e-166 590.9 783 44.7
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 9.3e-148 528.5 863 39.0
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.3e-145 519.6 490 58.6
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.3e-144 518.1 398 71.1
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.6e-144 517.7 377 68.4
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 1.8e-143 514.2 831 39.1
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 4.4e-142 509.6 778 40.0
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 8.7e-138 495.4 324 76.5
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.5e-113 414.8 482 53.1
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.8e-112 410.6 269 75.1
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 8.2e-104 382.5 255 73.3
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.4e-100 369.0 311 63.7
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 6.7e-98 362.8 275 64.0
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.4e-81 307.0 243 71.6
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 3.9e-61 240.7 830 26.4
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.0e-57 228.4 354 44.1
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 5.4e-47 193.7 213 52.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.0e-45 189.5 163 60.1
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.1e-43 181.8 849 23.3
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 7.6e-41 173.3 125 72.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.7e-40 172.2 119 73.9
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.2e-33 149.4 93 77.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-31 142.1 101 72.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.1e-30 138.7 220 43.6
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.5e-28 131.7 207 40.6
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 8.1e-27 126.7 70 85.7
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 8.1e-27 126.7 70 85.7
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.2e-24 118.6 70 87.1
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 3.5e-22 111.3 69 76.8
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.0e-21 108.2 123 48.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-18 99.4 86 60.5
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.3e-16 92.8 159 40.9
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.6e-14 84.3 61 72.1
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 4.3e-12 77.8 68 61.8
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 2.8e-11 75.1 77 54.5
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.7e-08 65.9 47 68.1
Thecc.09G330100 Theobroma cacao HOM05D000106 ORTHO05D002214 3.8e-08 64.7 51 74.5
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.9e-08 64.3 230 29.6
SEGI_04683 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.6e-06 57.8 42 69.0


User provided reference genes

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