Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.9e-41 172.2 92 100.0
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.9e-35 150.6 92 90.2
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 4.0e-31 137.9 83 89.2
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.2e-31 137.5 83 90.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.0e-30 135.6 83 89.2
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.2e-29 132.1 83 85.5
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.8e-29 131.7 92 79.3
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.9e-26 121.7 90 77.8
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 5.5e-25 117.5 92 73.9
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.2e-25 117.1 92 71.7
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.7e-24 114.4 84 78.6
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 4.7e-24 114.4 83 75.9
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.8e-23 112.5 83 74.7
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.3e-23 112.1 92 71.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.0e-23 111.3 85 75.3
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 6.8e-23 110.5 92 69.6
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.2e-22 109.8 78 79.5
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.2e-22 109.8 83 73.5
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 2.0e-22 109.0 92 70.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.6e-22 108.6 92 68.5
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.4e-22 107.8 92 66.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.7e-22 107.5 92 70.7
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 9.8e-22 106.7 83 67.5
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.3e-21 106.3 83 71.1
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 67.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.7e-21 104.8 84 73.8
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 4.8e-21 104.4 83 72.3
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 4.8e-21 104.4 83 71.1
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 4.8e-21 104.4 92 68.5
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 6.3e-21 104.0 83 67.5
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 6.3e-21 104.0 92 65.2
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.1e-20 103.2 83 73.5
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.4e-20 102.8 93 61.3
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 1.4e-20 102.8 92 63.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.4e-20 102.8 92 63.0
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 3.1e-20 101.7 83 72.3
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 4.1e-20 101.3 83 66.3
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.6e-19 99.4 83 69.9
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.0e-19 99.0 83 66.3
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 2.7e-19 98.6 83 66.3
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 7.7e-19 97.1 90 64.4
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 7.7e-19 97.1 83 68.7
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.0e-18 96.7 92 58.7
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.3e-18 96.3 83 63.9
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.7e-18 95.9 83 68.7
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.8e-18 94.7 83 63.9
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.8e-18 94.7 83 63.9
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 3.8e-18 94.7 83 60.2
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 5.0e-18 94.4 83 63.9
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 5.0e-18 94.4 83 63.9
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 5.0e-18 94.4 83 63.9
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 5.0e-18 94.4 83 62.7
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 6.5e-18 94.0 83 63.9
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 6.5e-18 94.0 83 63.9
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 6.5e-18 94.0 83 63.9
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 6.5e-18 94.0 83 66.3
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 6.5e-18 94.0 83 65.1
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 6.5e-18 94.0 83 65.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 8.5e-18 93.6 83 63.9
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-17 93.2 83 62.7
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.1e-17 93.2 83 62.7
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-17 92.8 83 62.7
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.5e-17 92.0 84 65.5
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 2.5e-17 92.0 84 66.7
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.2e-17 91.7 83 65.1
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.2e-17 91.7 84 65.5
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 4.2e-17 91.3 109 54.1
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.1e-16 89.0 77 68.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 2.1e-16 89.0 83 60.2
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.8e-16 88.6 85 62.4
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 3.6e-16 88.2 78 66.7
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 4.7e-16 87.8 109 52.3
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.0e-15 86.7 85 62.4
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.8e-15 85.9 84 63.1
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.3e-15 85.5 83 62.7
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.3e-15 85.5 83 62.7
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 60.2
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 3.0e-15 85.1 86 66.3
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.0e-15 84.7 84 61.9
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 6.8e-15 84.0 88 60.2
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.2e-14 83.2 85 60.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.5e-14 82.8 83 59.0
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 3.4e-14 81.6 83 57.8
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 4.4e-14 81.3 83 57.8
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 7.5e-14 80.5 98 56.1
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 7.5e-14 80.5 83 59.0
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 9.8e-14 80.1 84 54.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.3e-13 79.7 83 57.8
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.2e-13 79.0 83 59.0
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.8e-13 78.6 83 60.2
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 6.3e-13 77.4 103 49.5
COL.COLO4_20976 Corchorus olitorius HOM05D007429 ORTHO05D003505 1.1e-12 76.6 43 90.7
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 1.1e-12 76.6 85 55.3
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 3.1e-12 75.1 108 48.1
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 7.0e-12 73.9 98 53.1
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 7.0e-12 73.9 93 49.5
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 5.9e-11 70.9 84 54.8
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.0e-10 70.1 90 51.1
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.3e-10 68.9 83 53.0
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 2.3e-10 68.9 101 52.5
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.9e-10 68.6 84 51.2
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 2.9e-10 68.6 87 50.6
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 2.9e-10 68.6 103 46.6
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.9e-10 68.6 91 50.5
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 5.0e-10 67.8 90 47.8
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.6e-10 67.4 102 46.1
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 8.6e-10 67.0 79 54.4
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 8.6e-10 67.0 98 46.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 8.6e-10 67.0 66 57.6
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.5e-09 66.2 93 49.5
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.5e-09 66.2 83 54.2
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 1.9e-09 65.9 63 60.3
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 2.5e-09 65.5 86 48.8
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 3.3e-09 65.1 39 82.1
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 4.3e-09 64.7 94 45.7
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.6e-09 64.3 89 51.7
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 7.3e-09 63.9 91 46.2
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 9.5e-09 63.5 83 53.0
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 1.2e-08 63.2 122 40.2
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.6e-08 62.8 122 41.8
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-08 62.4 76 50.0
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.1e-08 62.4 76 50.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 2.1e-08 62.4 82 45.1
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.8e-08 62.0 97 45.4
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.8e-08 62.0 88 44.3
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.6e-08 61.6 100 45.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 4.7e-08 61.2 93 43.0
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 6.1e-08 60.8 81 49.4
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 6.1e-08 60.8 38 78.9
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 6.1e-08 60.8 100 50.0
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 6.1e-08 60.8 80 50.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 8.0e-08 60.5 90 51.1
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 8.0e-08 60.5 88 43.2
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.0e-07 60.1 104 45.2
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.0e-07 60.1 92 43.5
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.0e-07 60.1 92 43.5
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.0e-07 60.1 80 50.0
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.0e-07 60.1 92 43.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.8e-07 59.3 92 43.5
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.8e-07 59.3 92 44.6
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.8e-07 59.3 84 51.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.0e-07 58.5 92 43.5
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 4.0e-07 58.2 92 42.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 92 42.4
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 4.0e-07 58.2 92 42.4
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 4.0e-07 58.2 94 50.0
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.0e-07 58.2 93 45.2
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 5.2e-07 57.8 79 48.1
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 5.2e-07 57.8 91 46.2
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.2e-07 57.8 92 47.8
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 6.8e-07 57.4 83 45.8
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 6.8e-07 57.4 81 51.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 6.8e-07 57.4 92 47.8
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 8.9e-07 57.0 39 76.9
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 8.9e-07 57.0 91 39.6
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.2e-06 56.6 96 43.8
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 95 45.3
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.5e-06 56.2 92 48.9
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.5e-06 56.2 37 78.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.5e-06 56.2 90 44.4
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.0e-06 55.8 100 44.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.6e-06 55.5 89 40.4
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.4e-06 55.1 89 46.1
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.4e-06 55.1 97 42.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 4.4e-06 54.7 87 41.4
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 5.7e-06 54.3 86 44.2
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 5.7e-06 54.3 93 45.2
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.5e-06 53.9 89 44.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.5e-06 53.9 89 44.9
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 7.5e-06 53.9 37 70.3
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 7.5e-06 53.9 73 46.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.5e-06 53.9 98 42.9
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 7.5e-06 53.9 71 52.1
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 9.8e-06 53.5 84 42.9
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 9.8e-06 53.5 104 43.3
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 9.8e-06 53.5 81 43.2
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 9.8e-06 53.5 56 55.4


User provided reference genes

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