Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 4.6e-166 587.8 292 100.0
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 6.4e-144 514.2 292 87.3
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 6.7e-133 477.6 284 82.0
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 6.7e-133 477.6 284 82.0
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 1.4e-130 469.9 287 82.2
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.5e-129 466.5 284 81.0
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 3.6e-126 455.3 287 78.7
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 1.2e-121 440.3 292 78.8
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 7.2e-111 404.4 286 71.7
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 1.4e-109 400.2 286 70.3
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 3.0e-109 399.1 287 69.7
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 3.0e-109 399.1 287 71.1
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 6.7e-109 397.9 287 70.7
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 1.0e-104 384.0 281 69.4
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 1.3e-104 383.6 286 68.5
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 1.7e-104 383.3 290 67.6
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 2.2e-104 382.9 285 67.7
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 3.8e-104 382.1 280 70.7
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 1.9e-103 379.8 283 69.3
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 1.9e-103 379.8 288 67.4
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 3.2e-103 379.0 288 67.7
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 7.2e-103 377.9 282 68.4
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 1.0e-101 374.0 284 67.3
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 2.6e-100 369.4 281 68.3
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 4.4e-100 368.6 280 68.9
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 2.2e-99 366.3 282 66.7
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 4.8e-99 365.2 285 64.9
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 1.4e-98 363.6 284 68.0
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 1.4e-98 363.6 281 68.0
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 2.4e-98 362.8 281 66.5
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 2.4e-98 362.8 281 66.5
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 9.1e-98 360.9 282 66.7
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 1.3e-96 357.1 286 65.0
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 1.7e-96 356.7 286 64.3
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 2.7e-94 349.4 284 63.0
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 1.4e-93 347.1 290 62.4
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 3.0e-93 345.9 282 63.1
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 6.3e-91 338.2 285 61.1
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 7.0e-90 334.7 287 61.0
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 7.0e-90 334.7 283 61.5
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 2.0e-89 333.2 287 62.7
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 1.0e-88 330.9 285 61.1
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 1.3e-88 330.5 286 62.6
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.0e-88 328.6 284 60.2
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 1.5e-87 327.0 286 61.9
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 1.9e-87 326.6 290 59.0
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 1.2e-86 323.9 285 60.0
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 2.7e-86 322.8 285 60.4
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 4.7e-86 322.0 281 58.7
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 1.8e-85 320.1 287 60.3
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 1.5e-84 317.0 262 65.3
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 5.7e-84 315.1 299 58.9
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 1.4e-82 310.5 283 57.2
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 1.4e-82 310.5 284 57.7
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.4e-82 310.5 284 57.7
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 1.8e-82 310.1 282 59.2
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 2.0e-81 306.6 292 57.5
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 2.7e-81 306.2 286 56.6
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 4.5e-81 305.4 285 56.8
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 7.7e-81 304.7 286 58.4
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 2.5e-79 299.7 288 55.2
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 4.3e-79 298.9 282 56.0
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 1.6e-78 297.0 239 64.9
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 2.8e-78 296.2 287 54.4
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 8.0e-78 294.7 287 54.4
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 1.0e-77 294.3 302 52.0
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 3.0e-77 292.7 287 55.1
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.3e-75 287.3 254 61.0
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 2.9e-75 286.2 236 63.6
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 8.3e-75 284.6 240 62.9
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 1.1e-74 284.3 281 57.3
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 1.8e-74 283.5 268 59.0
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 1.2e-73 280.8 249 61.8
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 6.6e-72 275.0 241 63.1
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 2.5e-71 273.1 280 51.1
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 4.7e-70 268.9 284 52.8
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.1e-66 257.7 276 51.8
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 1.6e-65 253.8 259 55.6
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 1.7e-64 250.4 241 56.4
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.1e-63 247.7 284 50.7
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 5.6e-63 245.4 286 48.3
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 9.5e-63 244.6 292 47.6
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 2.8e-62 243.0 284 48.6
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.4e-60 236.1 284 49.3
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 6.4e-59 231.9 302 44.4
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 1.4e-53 214.2 297 46.5
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 1.2e-49 201.1 212 53.8
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.6e-49 200.7 243 49.4
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 3.5e-49 199.5 204 54.9
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 3.9e-48 196.1 208 53.4
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 5.1e-48 195.7 177 59.9
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 5.1e-48 195.7 177 59.9
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 6.6e-48 195.3 269 46.8
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 1.1e-47 194.5 205 54.6
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 1.9e-47 193.7 177 58.8
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 3.3e-47 193.0 208 52.4
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 4.3e-47 192.6 208 50.5
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 4.3e-47 192.6 177 58.8
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 4.3e-47 192.6 241 46.9
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 8.1e-46 188.3 285 38.2
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 3.1e-45 186.4 205 52.7
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 1.3e-43 181.0 116 76.7
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 1.3e-43 181.0 286 37.8
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.1e-42 177.9 173 56.1
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 1.9e-42 177.2 144 60.4
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 3.5e-41 172.9 137 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 3.3e-39 166.4 223 44.4
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 3.3e-39 166.4 137 59.9
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 3.4e-36 156.4 177 50.8
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 7.1e-34 148.7 203 46.3
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 4.6e-33 146.0 94 75.5
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 1.0e-32 144.8 163 49.1
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 5.1e-32 142.5 70 90.0
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.5e-31 140.2 211 43.1
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 6.7e-24 115.5 219 40.2
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 1.9e-18 97.4 81 61.7
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 7.1e-18 95.5 103 55.3
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 3.3e-15 86.7 75 60.0
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 9.7e-15 85.1 84 52.4
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 2.1e-14 84.0 49 77.6
Cpa.g.sc82.29 Carica papaya HOM05D006517 ORTHO05D007886 7.2e-10 68.9 67 47.8
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 6.1e-09 65.9 102 37.3
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 7.9e-09 65.5 103 37.9
A01p39440 Brassica napus HOM05D000903 ORTHO05D000731 9.7e-07 58.5 115 30.4
BraA01t03984Z Brassica rapa HOM05D000903 ORTHO05D000731 9.7e-07 58.5 115 30.4
CiPaw.10G098700 Carya illinoinensis HOM05D000088 ORTHO05D003056 2.2e-06 57.4 127 33.1
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 2.2e-06 57.4 94 34.0
C01p50270 Brassica napus HOM05D000903 ORTHO05D000731 2.8e-06 57.0 115 29.6
BolC1t04885H Brassica oleracea HOM05D000903 ORTHO05D000731 2.8e-06 57.0 115 29.6
BolC1t04982H Brassica oleracea HOM05D000903 ORTHO05D000731 2.8e-06 57.0 115 29.6
BcaC09g48396 Brassica carinata HOM05D000903 ORTHO05D000731 3.7e-06 56.6 115 29.6
Psat2g015120 Pisum sativum HOM05D000088 ORTHO05D003056 3.7e-06 56.6 81 42.0
Sed0009859 Sechium edule HOM05D000088 ORTHO05D003056 4.8e-06 56.2 81 37.0
Ca_00492_v3 Cicer arietinum L. HOM05D000088 ORTHO05D003056 6.3e-06 55.8 91 36.3
Lj6g0019783 Lotus japonicus HOM05D000088 ORTHO05D003056 6.3e-06 55.8 107 32.7
SalBow6G0039 Salvia bowleyana HOM05D006517 ORTHO05D007886 8.2e-06 55.5 27 85.2


User provided reference genes

Program Settings