Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 0.0e+00 1184.9 702 100.0
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 8.1e-294 1013.4 705 83.8
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.7e-291 1005.7 705 82.3
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.8e-286 987.6 702 82.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.5e-284 981.1 713 79.9
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.9e-281 970.3 705 80.9
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.6e-273 944.5 713 78.0
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.9e-264 914.8 614 85.2
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 2.4e-261 905.6 705 79.1
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.9e-259 898.7 734 74.0
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.2e-244 850.1 710 70.7
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.3e-243 846.7 710 70.7
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 4.7e-241 838.2 706 70.3
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.8e-240 836.3 710 69.6
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.5e-239 833.2 714 69.3
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 9.1e-237 823.9 707 70.4
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 5.2e-232 808.1 724 67.8
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.8e-232 807.7 712 68.0
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-230 803.1 700 68.9
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.8e-229 799.7 710 67.3
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 9.2e-229 797.3 755 64.8
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.5e-228 795.0 713 67.7
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.0e-227 793.9 717 68.1
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 2.9e-227 792.3 717 67.1
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 9.5e-226 787.3 711 67.1
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.8e-225 785.8 610 75.6
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.3e-224 782.7 736 65.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.0e-224 781.9 712 66.3
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 6.8e-224 781.2 716 65.6
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.5e-223 780.0 709 67.0
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 2.6e-223 779.2 702 68.8
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.3e-222 776.9 737 65.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.4e-221 773.5 700 67.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 5.9e-220 768.1 714 66.2
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-218 763.1 728 68.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.6e-217 760.0 714 65.7
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 7.5e-215 751.1 712 63.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.3e-211 740.3 736 63.0
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 3.0e-211 739.2 718 64.3
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.9e-210 736.5 716 63.3
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 3.6e-209 732.3 651 69.0
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 6.2e-209 731.5 725 64.4
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 4.6e-204 715.3 716 61.3
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.1e-202 710.7 721 62.7
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 8.1e-201 704.5 725 61.4
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 8.9e-200 701.0 770 59.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.2e-199 700.7 725 61.1
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.5e-199 700.3 712 63.9
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 3.4e-199 699.1 704 61.8
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 5.8e-199 698.4 712 60.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 5.4e-197 691.8 710 62.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.6e-196 690.3 722 59.8
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.1e-196 689.9 732 60.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.7e-196 689.5 704 61.6
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 2.3e-195 686.4 716 59.6
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 3.9e-195 685.6 694 62.7
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.5e-194 683.7 727 60.0
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 2.4e-192 676.4 714 60.1
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.1e-192 676.0 723 59.9
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.1e-192 676.0 727 62.9
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.6e-191 672.9 713 60.0
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 7.6e-191 671.4 735 58.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 7.6e-191 671.4 731 59.6
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 3.8e-190 669.1 738 58.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 8.4e-190 667.9 731 59.6
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.1e-188 663.3 747 58.2
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.7e-188 662.9 722 59.6
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.5e-188 662.5 728 62.2
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.3e-187 660.6 728 62.2
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 8.7e-187 657.9 728 62.1
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.5e-186 657.1 722 58.9
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 5.6e-186 655.2 631 65.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.1e-185 653.3 741 58.3
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.8e-185 652.9 740 57.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.0e-184 649.0 738 61.2
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.2e-183 647.5 718 59.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.6e-183 646.4 722 58.3
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 1.0e-179 634.4 675 59.0
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.9e-179 632.5 713 58.3
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 5.6e-178 628.6 739 55.3
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.8e-177 626.3 716 57.1
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 5.3e-176 622.1 751 56.1
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-175 620.5 745 56.1
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.5e-175 619.0 724 55.5
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 7.6e-175 618.2 719 56.7
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.3e-174 617.5 719 57.3
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.7e-174 617.1 721 55.6
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.1e-173 614.4 477 72.3
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.2e-172 610.9 669 58.6
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.0e-171 607.8 796 52.4
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-171 607.1 738 58.9
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 8.7e-171 604.7 727 56.0
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 3.3e-170 602.8 713 55.7
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 4.8e-169 599.0 704 55.4
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.4e-168 596.7 712 55.9
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 5.3e-168 595.5 708 53.5
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 5.8e-167 592.0 731 55.0
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.5e-162 576.6 759 53.5
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.7e-158 563.9 733 51.4
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 9.3e-157 558.1 708 52.8
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.7e-156 556.6 762 51.0
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 6.1e-156 555.4 380 80.8
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 6.7e-155 552.0 724 52.1
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.8e-153 546.6 721 52.0
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.7e-148 529.3 720 52.9
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 2.6e-146 523.5 623 57.5
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 4.5e-135 486.1 449 66.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.7e-126 457.6 666 49.5
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 7.5e-122 442.2 529 55.8
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.0e-108 395.6 498 55.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.8e-107 392.5 498 55.6
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 2.0e-103 380.9 715 41.4
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.4e-98 363.2 430 55.3
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.3e-93 346.7 229 82.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 3.4e-90 337.0 236 80.1
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.8e-83 312.8 211 80.1
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.8e-83 312.8 211 80.1
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.9e-83 312.4 231 75.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.4e-81 306.2 231 76.2
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 3.5e-79 300.4 433 51.3
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.1e-77 295.4 186 84.4
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.1e-76 291.2 456 45.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 5.1e-70 270.0 380 48.9
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 6.6e-70 269.6 440 44.3
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.2e-65 254.6 169 82.2
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.9e-64 251.5 454 40.5
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 5.8e-58 229.9 136 89.0
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 2.7e-55 221.1 316 50.3
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.4e-48 198.7 299 51.8
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.9e-45 188.3 499 35.1
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.6e-39 167.5 201 57.7
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 2.6e-34 151.4 243 44.9
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 2.6e-29 134.8 86 86.0
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 3.3e-29 134.4 189 52.9
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 3.3e-29 134.4 94 73.4
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.2e-28 131.7 212 46.2
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.6e-23 114.4 72 86.1
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.0e-23 113.2 70 90.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.8e-22 112.1 70 88.6
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.8e-22 112.1 70 88.6
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 4.4e-21 107.5 294 36.1
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-19 102.8 70 85.7
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.9e-17 94.7 451 26.8
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 4.8e-12 77.4 75 60.0
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 6.3e-12 77.0 67 64.2
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.6e-10 72.4 125 45.6
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.0e-09 69.7 468 26.5
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.1e-08 66.2 50 76.0
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.6e-07 62.4 341 24.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.1e-07 62.0 338 24.6
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 2.1e-07 62.0 339 24.5
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 4.7e-07 60.8 331 24.8
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 8.0e-07 60.1 340 24.4
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 1.0e-06 59.7 336 26.8
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 1.8e-06 58.9 66 56.1
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.8e-06 58.9 336 24.1
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 2.3e-06 58.5 337 25.8
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 2.3e-06 58.5 336 27.1
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 3.0e-06 58.2 344 25.0
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 3.0e-06 58.2 329 25.5
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.0e-06 57.8 332 24.7
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 8.8e-06 56.6 328 22.9
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 8.8e-06 56.6 339 23.9


User provided reference genes

Program Settings