Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 8.0e-183 643.7 331 100.0
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 7.3e-136 487.6 315 81.9
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 3.6e-135 485.3 316 82.0
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 8.1e-135 484.2 316 81.6
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.5e-133 479.9 316 81.3
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.0e-113 414.1 314 72.0
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.5e-112 409.5 316 71.8
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.8e-111 405.2 320 67.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 5.3e-110 401.7 313 69.0
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 4.5e-109 398.7 305 69.2
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 3.8e-108 395.6 313 68.1
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.9e-107 393.3 312 64.7
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 7.9e-106 387.9 297 68.4
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 3.9e-105 385.6 313 65.8
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 1.9e-104 383.3 308 66.6
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 5.7e-104 381.7 324 64.2
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.4e-102 377.1 263 77.9
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 9.0e-102 374.4 315 63.8
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 4.5e-101 372.1 318 64.5
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.0e-100 370.9 290 67.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.2e-99 365.9 316 61.1
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.8e-97 360.1 317 61.2
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 3.0e-97 359.4 316 61.1
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.1e-96 357.5 314 61.8
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.5e-96 357.1 315 61.3
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 3.3e-96 355.9 316 60.8
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 7.4e-96 354.8 320 60.0
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.6e-95 353.6 305 61.6
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 4.8e-95 352.1 289 63.3
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.4e-94 349.7 304 61.5
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 3.1e-94 349.4 293 63.5
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.5e-93 347.1 323 58.8
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 2.6e-93 346.3 322 58.7
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 2.6e-93 346.3 305 62.3
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.7e-92 343.6 330 59.1
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 1.7e-92 343.6 298 60.4
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.2e-92 343.2 314 60.8
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 3.8e-92 342.4 326 60.1
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 6.5e-92 341.7 300 60.0
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.1e-91 340.9 291 61.9
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 5.5e-91 338.6 308 60.4
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.6e-90 337.0 323 57.3
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 2.3e-89 333.2 306 59.2
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 3.0e-89 332.8 288 61.8
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 3.0e-89 332.8 303 58.7
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 3.0e-89 332.8 265 65.7
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 3.0e-89 332.8 314 58.3
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 3.9e-89 332.4 288 61.8
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.1e-88 330.9 316 59.5
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 1.5e-88 330.5 320 57.2
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 9.7e-88 327.8 323 56.3
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 4.8e-87 325.5 294 59.5
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 8.2e-87 324.7 323 55.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 8.2e-87 324.7 294 59.5
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 2.6e-85 319.7 294 59.2
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 3.4e-85 319.3 289 60.9
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 7.7e-85 318.2 302 58.3
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.1e-83 314.3 313 55.0
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.5e-83 313.2 304 56.9
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 4.2e-83 312.4 304 56.9
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 3.6e-82 309.3 307 55.7
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.0e-81 307.8 291 56.7
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 1.4e-81 307.4 302 56.6
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.4e-81 307.4 319 54.5
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 5.1e-81 305.4 302 54.3
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 2.0e-80 303.5 294 56.1
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 2.6e-80 303.1 286 56.6
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 9.7e-80 301.2 312 55.8
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.3e-79 300.8 316 53.8
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 8.2e-79 298.1 270 58.1
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.4e-78 297.4 375 48.3
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 1.6e-77 293.9 266 60.9
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.6e-77 293.1 272 58.8
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.7e-76 290.4 305 54.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.9e-76 289.7 294 55.1
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 5.5e-75 285.4 319 51.1
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 6.1e-74 282.0 328 49.1
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.8e-71 273.1 340 47.6
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.4e-70 270.0 410 42.2
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 2.4e-70 270.0 297 50.5
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 4.1e-70 269.2 291 54.6
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 2.0e-69 266.9 284 51.1
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 5.9e-69 265.4 294 50.0
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 1.0e-68 264.6 292 50.0
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 4.7e-66 255.8 309 50.2
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.0e-65 254.6 280 51.1
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 2.3e-65 253.4 285 47.0
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.4e-62 244.2 262 51.1
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 7.7e-61 238.4 205 60.5
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 3.8e-60 236.1 192 71.9
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.6e-58 230.7 201 58.2
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 2.7e-58 229.9 152 77.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 1.0e-57 228.0 155 75.5
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.0e-57 226.1 267 47.9
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.2e-57 225.7 267 47.9
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 8.8e-57 224.9 230 55.7
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 7.5e-56 221.9 233 56.2
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 7.5e-56 221.9 261 48.3
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.8e-55 219.9 267 45.7
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.8e-54 217.2 214 58.4
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.8e-52 209.5 151 72.2
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.5e-48 197.6 131 71.8
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.3e-44 184.5 266 40.6
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.0e-44 182.6 267 45.3
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.5e-40 171.0 219 49.3
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.9e-39 166.8 100 78.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 9.2e-38 161.8 272 39.7
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.6e-37 161.0 144 59.7
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 6.0e-37 159.1 137 57.7
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.9e-36 156.4 100 73.0
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 6.6e-36 155.6 258 44.2
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 1.6e-34 151.0 173 48.0
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.4e-30 136.0 87 69.0
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 6.6e-28 129.0 131 50.4
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 7.3e-27 125.6 150 49.3
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 9.5e-27 125.2 115 58.3
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.8e-26 123.6 81 70.4
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.7e-26 122.9 150 50.0
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 6.8e-25 119.0 145 46.9
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 2.3e-20 104.0 102 53.9
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.5e-16 91.3 72 62.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-13 81.6 98 49.0
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 8.7e-12 75.5 82 50.0
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 4.0e-09 66.6 76 50.0
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.3e-09 66.2 114 36.0
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 1.2e-08 65.1 54 53.7
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 1.2e-08 65.1 76 51.3
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 2.0e-08 64.3 46 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 9.9e-08 62.0 150 28.7
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 2.2e-07 60.8 74 48.6
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.2e-07 60.8 106 38.7
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.8e-07 60.1 52 63.5
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.4e-06 58.2 91 35.2
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 5.4e-06 56.2 49 51.0


User provided reference genes

Program Settings