Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 0.0e+00 1737.2 875 100.0
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 0.0e+00 1231.1 1128 62.7
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 0.0e+00 1231.1 1139 61.6
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 0.0e+00 1209.1 1137 59.5
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 2.9e-309 1065.1 1022 59.7
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 4.9e-264 914.8 1132 48.5
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 8.4e-264 914.1 1145 47.8
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 4.3e-260 901.7 1139 47.4
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.7e-256 889.8 964 53.0
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 1.0e-253 880.6 1231 45.0
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 1.6e-251 873.2 1140 46.6
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 8.4e-248 860.9 1058 48.5
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 1.1e-244 850.5 1148 45.2
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 4.5e-233 812.0 1141 44.1
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 6.5e-232 808.1 1139 44.5
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 9.3e-231 804.3 1143 43.0
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.0e-229 800.8 1143 43.0
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 6.7e-229 798.1 1142 42.9
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.4e-226 789.6 1143 42.9
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 6.5e-224 781.6 1123 43.9
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.2e-222 777.3 1128 43.2
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 3.6e-222 775.8 1143 42.3
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 1.4e-221 773.9 1144 42.6
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 4.8e-219 765.4 1128 43.8
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 4.1e-218 762.3 1129 43.0
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 3.4e-217 759.2 1146 42.1
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 3.2e-215 752.7 1158 41.7
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 3.0e-213 746.1 1141 41.5
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 7.0e-210 734.9 1134 41.3
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 3.5e-209 732.6 1124 42.6
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 6.1e-206 721.8 1202 40.9
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 1.0e-205 721.1 1137 41.5
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 2.2e-203 713.4 1084 41.6
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 2.4e-202 709.9 1167 40.4
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 1.5e-199 700.7 977 44.2
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 2.3e-197 693.3 1158 38.9
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 2.9e-192 676.4 1033 43.0
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 1.9e-191 673.7 1137 39.0
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 7.2e-191 671.8 1115 38.3
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 8.0e-190 668.3 1044 41.5
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 4.0e-189 666.0 1116 38.6
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 9.8e-188 661.4 1249 37.6
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 1.8e-186 657.1 1032 40.0
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 4.1e-186 656.0 1083 38.9
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 1.6e-185 654.1 1114 38.0
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 3.3e-183 646.4 1114 37.4
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 5.5e-183 645.6 1088 39.6
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 1.6e-182 644.0 1120 38.0
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 1.6e-182 644.0 1100 39.2
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 4.7e-182 642.5 1147 39.0
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 4.0e-181 639.4 1146 38.5
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 6.8e-181 638.6 928 44.8
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 2.7e-177 626.7 1137 37.4
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 4.3e-175 619.4 941 42.7
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.1e-165 588.2 684 52.3
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 1.8e-165 587.4 1180 35.8
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 1.7e-160 570.9 1016 39.3
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 5.1e-152 542.7 1091 35.0
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 2.5e-151 540.4 442 62.9
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 5.2e-149 532.7 433 62.6
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 9.9e-148 528.5 988 36.0
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 2.5e-143 513.8 428 61.0
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 2.1e-142 510.8 994 36.2
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 6.4e-139 499.2 540 52.2
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 1.6e-126 458.0 390 60.8
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 2.0e-124 451.1 530 47.7
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 1.6e-121 441.4 447 55.0
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 2.4e-117 427.6 891 35.2
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 4.5e-116 423.3 407 55.8
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.6e-110 404.8 273 76.9
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 2.8e-110 404.1 301 69.8
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 5.3e-109 399.8 865 33.9
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 9.0e-109 399.1 1021 31.6
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 9.0e-109 399.1 465 46.7
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.0e-100 371.3 1214 27.5
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.7e-89 333.6 276 64.1
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 1.8e-88 331.6 418 42.8
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 5.2e-88 330.1 309 59.2
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 1.6e-76 292.0 337 52.2
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 8.3e-70 269.6 260 59.6
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 1.6e-68 265.4 228 62.7
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 5.6e-66 256.9 203 59.6
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 1.3e-62 245.7 861 29.0
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.3e-62 245.7 215 60.0
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 8.9e-56 223.0 428 33.9
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 2.6e-55 221.5 1041 24.5
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 1.3e-51 209.1 289 41.2
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 8.9e-48 196.4 158 69.0
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 8.9e-48 196.4 158 69.0
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 2.2e-38 165.2 162 55.6
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 3.2e-37 161.4 154 57.8
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.0e-35 156.4 229 42.4
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 3.3e-34 151.4 220 43.6
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 4.3e-34 151.0 254 36.6
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 8.1e-33 146.7 220 44.1
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 2.4e-32 145.2 167 50.9
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 2.2e-30 138.7 107 67.3
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 9.6e-26 123.2 85 71.8
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.3e-19 102.8 91 60.4
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.7e-14 85.9 148 35.1
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 5.1e-11 74.3 215 28.4
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 4.8e-09 67.8 124 40.3


User provided reference genes

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