Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.2e-216 756.1 352 100.0
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 1.4e-182 642.9 336 90.2
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 1.2e-176 623.2 332 88.9
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.8e-172 609.4 334 86.5
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 3.0e-172 608.6 335 86.0
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 4.4e-171 604.7 334 85.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 2.0e-147 526.2 345 73.0
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 3.5e-144 515.4 328 73.8
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 1.5e-142 510.0 333 72.4
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 5.6e-142 508.1 346 70.2
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 9.5e-142 507.3 358 68.2
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 4.7e-141 505.0 339 71.4
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 6.2e-141 504.6 328 73.5
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 6.2e-141 504.6 324 74.1
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.5e-139 500.0 340 70.3
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 2.0e-139 499.6 332 70.5
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 5.8e-139 498.0 325 69.5
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 9.8e-139 497.3 325 71.4
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 1.3e-138 496.9 332 72.0
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 1.3e-138 496.9 337 70.0
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 1.4e-137 493.4 328 68.9
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 1.4e-137 493.4 326 71.8
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 1.9e-137 493.0 328 68.6
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 1.6e-136 490.0 330 70.3
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.6e-136 490.0 325 70.8
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 3.5e-136 488.8 326 69.0
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 3.5e-136 488.8 325 68.9
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 4.6e-136 488.4 335 69.0
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 4.6e-136 488.4 334 71.6
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 4.6e-136 488.4 334 71.6
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.0e-135 487.3 327 68.2
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 1.3e-135 486.9 329 68.7
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 2.3e-135 486.1 326 68.7
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 3.0e-135 485.7 334 68.9
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 3.9e-135 485.3 332 69.0
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 5.0e-135 485.0 344 68.9
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 1.1e-134 483.8 333 69.1
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 1.5e-134 483.4 333 68.5
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 1.9e-134 483.0 325 68.0
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.9e-134 483.0 321 70.7
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 3.3e-134 482.3 322 69.6
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 3.3e-134 482.3 330 66.1
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 4.3e-134 481.9 325 66.8
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 4.3e-134 481.9 343 66.5
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 4.3e-134 481.9 330 67.9
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 9.5e-134 480.7 322 70.2
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 1.6e-133 479.9 323 69.0
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 3.6e-133 478.8 335 68.4
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 4.7e-133 478.4 363 64.2
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 6.2e-133 478.0 328 68.3
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 1.1e-132 477.2 323 68.7
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 1.1e-132 477.2 384 62.2
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 1.4e-132 476.9 338 68.0
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 1.8e-132 476.5 330 67.0
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 4.0e-132 475.3 327 70.0
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 6.8e-132 474.6 336 67.0
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 6.8e-132 474.6 329 69.3
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 8.9e-132 474.2 331 65.6
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 2.0e-131 473.0 333 66.7
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.3e-130 470.3 325 68.3
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.4e-129 466.8 340 67.4
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 7.1e-129 464.5 340 66.8
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.2e-128 463.8 328 66.8
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 1.2e-128 463.8 385 59.7
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 2.7e-128 462.6 393 58.5
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 4.6e-128 461.8 321 67.3
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 7.8e-128 461.1 340 63.8
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 2.3e-127 459.5 327 67.6
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 8.6e-127 457.6 338 63.9
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 2.5e-126 456.1 328 67.1
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 6.2e-125 451.4 340 62.1
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 2.0e-123 446.4 333 63.4
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 2.0e-123 446.4 360 59.2
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.6e-123 446.0 319 66.8
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.6e-123 446.0 319 66.8
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 6.4e-122 441.4 303 66.7
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 6.4e-122 441.4 307 68.7
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 3.0e-119 432.6 335 62.1
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 9.3e-113 411.0 357 57.7
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 6.0e-112 408.3 279 69.9
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 7.8e-112 407.9 277 69.7
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 1.3e-111 407.1 280 68.6
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 3.9e-111 405.6 332 58.7
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.5e-110 402.9 275 69.8
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 7.3e-110 401.4 282 68.8
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 9.6e-110 401.0 359 57.4
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 2.1e-109 399.8 283 68.2
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 3.6e-109 399.1 327 59.3
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 1.6e-101 373.6 353 53.8
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 4.9e-98 362.1 282 63.5
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 1.4e-97 360.5 338 54.1
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 7.1e-97 358.2 268 64.6
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.2e-91 340.9 259 64.9
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 4.2e-65 252.7 160 71.2
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 7.9e-64 248.4 166 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.5e-57 227.6 280 46.8
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 5.5e-57 225.7 185 63.2
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 9.4e-57 224.9 331 40.2
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 3.0e-55 219.9 271 45.8
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.2e-49 199.9 118 74.6
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 1.2e-48 198.0 121 71.1
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.7e-42 177.6 299 35.5
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 1.7e-42 177.6 111 71.2
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 5.0e-34 149.4 328 32.0
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 8.9e-31 138.7 85 72.9
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 9.5e-25 118.6 249 31.3
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.0e-18 96.3 75 60.0
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 6.6e-18 95.9 53 77.4
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 6.6e-18 95.9 55 76.4
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.5e-17 94.0 186 36.6
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 3.3e-17 93.6 52 78.8
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 2.0e-14 84.3 96 47.9
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.3e-13 81.6 99 46.5
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.7e-11 73.9 91 45.1
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.9e-09 67.8 62 53.2
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 3.6e-08 63.5 272 23.5
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 6.2e-08 62.8 142 28.2
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 6.2e-08 62.8 142 28.2
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 1.4e-07 61.6 272 23.9
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 3.1e-07 60.5 142 27.5
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 5.2e-07 59.7 270 22.6
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.2e-06 58.5 253 23.3
Rhsim11G0036300 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.2e-06 58.5 32 68.8
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 1.5e-06 58.2 268 25.0


User provided reference genes

Program Settings