Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 2.0e-189 665.6 344 100.0
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 1.6e-173 612.8 344 91.3
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 9.5e-171 603.6 347 89.9
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.2e-170 603.2 344 91.0
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.3e-161 572.4 340 85.6
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.2e-159 565.8 336 85.1
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 2.7e-149 532.3 344 80.5
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.6e-141 506.5 344 75.3
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.6e-141 506.5 344 75.3
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 6.6e-140 501.1 348 72.4
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.5e-139 500.0 347 78.1
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.8e-138 495.0 341 71.8
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 3.1e-137 492.3 351 71.2
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 9.0e-137 490.7 348 73.0
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 1.5e-136 490.0 351 72.4
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.8e-136 488.0 338 72.8
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.2e-135 486.1 320 75.3
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 1.4e-134 483.4 348 70.4
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-132 476.9 280 88.2
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 2.3e-132 476.1 343 71.1
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 3.9e-132 475.3 333 70.6
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.5e-131 472.6 316 71.2
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 2.5e-131 472.6 338 69.8
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.5e-131 472.6 338 68.3
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.5e-131 472.6 338 67.5
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 7.4e-131 471.1 339 70.5
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 9.6e-131 470.7 347 66.0
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.1e-130 469.5 345 69.6
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 3.7e-130 468.8 338 69.2
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.7e-130 468.8 343 69.1
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 8.1e-130 467.6 314 73.6
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 8.1e-130 467.6 345 69.6
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 8.1e-130 467.6 331 71.3
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 1.8e-129 466.5 333 70.9
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.4e-129 466.1 322 72.4
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.0e-129 465.3 347 65.7
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.0e-129 465.3 347 65.7
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 4.0e-129 465.3 338 68.3
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 6.9e-129 464.5 341 69.8
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 9.0e-129 464.2 347 66.6
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.2e-128 463.8 338 69.8
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 2.6e-128 462.6 337 69.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.5e-128 461.8 341 65.7
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.9e-127 459.1 345 66.4
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 4.9e-127 458.4 338 67.8
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.4e-126 456.8 348 66.4
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.9e-126 456.4 329 69.6
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.5e-126 456.1 338 68.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 3.2e-126 455.7 355 68.7
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-125 453.8 338 67.5
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.2e-125 453.8 338 67.5
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.6e-125 453.4 314 71.7
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.6e-125 453.4 341 69.8
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 2.1e-125 453.0 335 68.4
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 2.7e-125 452.6 347 66.3
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 2.7e-125 452.6 347 66.3
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 3.5e-125 452.2 327 69.7
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 3.5e-125 452.2 353 69.1
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 3.5e-125 452.2 353 69.1
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 4.6e-125 451.8 347 66.0
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-124 450.3 349 65.6
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-124 450.3 349 65.6
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 1.3e-124 450.3 349 65.6
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 3.9e-124 448.7 349 65.3
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.9e-124 448.7 337 68.0
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 9.6e-123 444.1 346 66.2
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.1e-122 443.0 316 70.3
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.8e-121 439.9 323 69.3
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.4e-121 439.5 345 65.2
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 4.1e-121 438.7 339 65.5
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 5.3e-121 438.3 339 65.8
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.2e-120 437.2 339 64.9
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.6e-120 436.0 343 65.6
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 6.5e-119 431.4 332 65.7
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.2e-118 429.1 329 67.2
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 7.2e-118 427.9 334 64.1
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 9.3e-118 427.6 347 62.5
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 6.1e-117 424.9 338 62.7
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.0e-116 424.1 337 62.9
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 2.3e-116 422.9 343 64.1
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 3.9e-116 422.2 346 62.1
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 8.7e-116 421.0 341 63.3
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 8.7e-116 421.0 337 62.6
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.1e-115 420.6 342 63.2
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.9e-115 419.9 317 65.0
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.5e-115 419.5 345 61.2
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 3.3e-115 419.1 348 62.6
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.7e-114 415.6 348 62.4
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 4.8e-114 415.2 342 62.3
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 8.2e-114 414.5 344 61.3
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 5.3e-113 411.8 340 60.6
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 9.0e-113 411.0 338 60.9
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.7e-112 407.9 341 60.7
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 3.8e-111 405.6 344 58.1
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 8.5e-111 404.4 301 69.1
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.1e-110 404.1 338 63.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.2e-110 402.5 269 73.2
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.7e-109 399.4 275 74.2
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.6e-109 398.7 332 60.2
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 7.9e-109 397.9 326 61.3
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-107 394.0 340 61.5
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.1e-107 394.0 331 60.1
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.3e-107 392.1 331 59.8
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.4e-105 387.1 322 60.2
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 4.1e-105 385.6 307 64.8
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.9e-103 379.4 333 58.3
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 5.0e-103 378.6 314 61.8
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-101 374.0 346 56.1
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.7e-101 372.1 334 59.3
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.5e-99 367.1 257 71.2
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 3.3e-99 365.9 340 56.5
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 4.4e-99 365.5 336 58.9
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 6.3e-98 361.7 337 56.1
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 2.4e-97 359.8 344 55.2
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.7e-96 354.8 337 56.4
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.3e-95 354.0 303 60.1
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.9e-95 352.8 333 56.8
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.9e-94 350.1 337 53.4
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.2e-94 349.0 342 52.3
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 7.2e-94 348.2 334 51.5
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 4.7e-93 345.5 397 49.9
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 6.1e-93 345.1 256 69.1
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 8.0e-93 344.7 334 51.8
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 8.0e-93 344.7 333 56.2
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.4e-92 344.0 342 51.8
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.8e-92 343.6 333 55.9
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 2.3e-92 343.2 249 68.3
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 4.0e-92 342.4 341 51.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 8.8e-92 341.3 340 52.6
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.4e-91 339.0 342 50.9
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 2.2e-90 336.7 342 51.5
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.8e-90 336.3 336 50.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.8e-89 333.6 343 50.1
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.8e-89 333.6 343 50.1
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 9.1e-89 331.3 350 50.3
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.2e-88 330.9 346 51.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 5.9e-88 328.6 333 52.3
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.7e-87 327.0 319 52.4
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.7e-87 327.0 333 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.6e-85 319.3 335 50.7
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.3e-84 316.6 322 50.0
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 3.0e-84 316.2 313 50.5
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 6.8e-84 315.1 267 61.4
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 1.5e-83 313.9 332 49.7
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 9.1e-81 304.7 319 47.6
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.4e-78 294.7 223 65.9
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 6.1e-77 292.0 179 75.4
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.0e-76 289.7 189 72.0
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.0e-75 287.0 189 72.0
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.4e-75 285.8 191 70.7
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.1e-70 271.2 189 69.3
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.5e-70 270.0 189 67.2
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 5.6e-70 268.9 315 47.3
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.7e-63 247.3 183 66.7
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.2e-61 241.1 232 53.4
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 3.4e-59 233.0 225 55.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-58 231.1 184 61.4
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 3.7e-58 229.6 190 58.9
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 5.6e-54 215.7 320 40.0
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 5.2e-52 209.1 228 52.2
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 7.5e-51 205.3 158 66.5
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-50 204.5 325 38.8
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 2.1e-40 170.6 166 56.6
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.9e-38 164.1 161 52.8
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 3.6e-37 159.8 172 47.1
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.7e-31 141.0 104 67.3
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 8.7e-31 138.7 89 69.7
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 7.3e-30 135.6 332 33.1
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-29 134.8 92 66.3
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 2.0e-27 127.5 95 64.2
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 2.1e-24 117.5 77 71.4
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 1.0e-23 115.2 81 66.7
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 6.6e-23 112.5 80 67.5
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-22 111.7 76 65.8
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 4.9e-18 96.3 324 27.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.6e-16 91.3 75 61.3
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-14 84.7 67 64.2
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.3e-13 81.6 48 77.1
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 1.6e-13 81.3 52 71.2
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.8e-12 77.8 57 61.4
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-11 73.2 74 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.3e-07 60.8 70 47.1
COL.COLO4_35765 Corchorus olitorius HOM05D003755 ORTHO05D160063 3.0e-07 60.5 33 87.9


User provided reference genes

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