Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 8.1e-177 623.6 315 100.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.6e-156 554.7 320 87.5
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.1e-156 554.3 320 87.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.9e-155 551.6 320 86.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.3e-154 548.5 320 86.2
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.4e-152 542.3 324 85.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.0e-151 539.3 320 85.3
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.6e-151 538.9 320 85.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.3e-145 520.0 320 82.8
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.5e-117 426.8 327 67.9
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.2e-113 412.9 327 65.4
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 9.2e-112 407.5 327 63.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 9.2e-112 407.5 327 65.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.1e-109 400.6 294 68.7
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.6e-109 398.3 328 65.2
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.6e-108 396.7 324 61.7
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.6e-108 396.7 328 63.4
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 8.0e-108 394.4 325 62.8
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.0e-107 392.5 326 62.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 6.8e-107 391.3 326 62.9
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 8.9e-107 391.0 327 62.4
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.5e-106 390.2 328 62.5
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.7e-106 388.3 325 61.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 5.7e-106 388.3 326 61.7
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 5.7e-106 388.3 327 63.3
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 7.5e-106 387.9 327 62.4
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.9e-105 385.2 322 62.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.1e-104 384.0 326 61.7
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 5.4e-104 381.7 325 62.2
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 5.4e-104 381.7 326 60.1
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.6e-103 378.6 339 60.5
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.0e-102 375.9 325 60.9
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 8.6e-102 374.4 333 61.6
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 8.6e-102 374.4 337 57.6
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 1.1e-101 374.0 330 61.2
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.1e-101 374.0 326 60.4
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.5e-101 372.9 326 60.7
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 5.6e-101 371.7 325 60.0
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.6e-100 370.2 324 61.4
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.8e-99 366.7 320 58.1
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.3e-99 366.3 327 61.2
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 3.1e-99 365.9 319 59.9
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 5.2e-99 365.2 326 61.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.5e-98 363.6 324 58.0
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.6e-98 362.8 327 58.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 3.4e-98 362.5 305 63.0
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 4.4e-98 362.1 318 62.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 2.2e-97 359.8 329 57.1
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 2.9e-97 359.4 329 55.3
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 6.4e-97 358.2 320 58.4
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 8.3e-97 357.8 333 57.1
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.2e-96 355.9 299 61.2
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.2e-96 355.9 305 60.3
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.4e-96 355.1 298 62.1
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 7.8e-95 351.3 325 57.8
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.1e-93 347.4 329 54.7
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 3.3e-93 345.9 353 52.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 4.7e-92 342.0 275 62.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.0e-91 339.0 323 58.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 8.9e-91 337.8 298 56.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.2e-90 337.4 301 57.8
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 4.4e-90 335.5 321 55.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.4e-90 335.5 266 63.5
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.3e-89 334.0 331 53.8
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.2e-89 333.2 330 52.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 4.9e-89 332.0 327 53.2
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 6.4e-89 331.6 325 53.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.3e-89 331.3 325 56.0
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.1e-88 330.9 338 55.3
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.2e-88 329.3 328 53.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 3.2e-88 329.3 322 54.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 5.4e-88 328.6 325 54.5
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.2e-87 327.4 271 62.4
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.2e-87 327.4 295 59.0
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 2.7e-87 326.2 326 54.3
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.7e-87 326.2 352 52.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.5e-87 325.9 318 53.5
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.0e-87 325.1 326 53.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.0e-87 325.1 313 54.0
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 7.8e-87 324.7 315 54.0
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.7e-86 323.6 333 52.3
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.7e-86 323.6 331 54.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 5.1e-86 322.0 325 54.5
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.1e-85 320.9 317 52.7
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.9e-85 320.1 336 53.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 7.3e-85 318.2 250 67.6
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 7.3e-85 318.2 327 53.8
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.1e-83 312.8 325 51.1
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 8.9e-83 311.2 293 56.0
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.2e-82 310.8 290 55.9
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 7.1e-80 301.6 210 67.6
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-79 300.8 333 50.5
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 5.1e-78 295.4 345 48.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 7.3e-77 291.6 233 61.8
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.7e-76 288.9 343 49.3
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-75 287.7 343 49.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.1e-75 286.2 309 52.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 4.0e-75 285.8 336 48.5
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 8.4e-73 278.1 343 48.7
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.2e-72 276.2 267 52.8
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.2e-71 274.2 253 56.9
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.1e-71 273.5 273 53.8
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.0e-70 271.2 316 47.8
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.7e-70 270.4 245 59.6
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.7e-70 270.4 245 59.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 8.1e-68 261.5 280 49.6
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 3.4e-66 256.1 311 48.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.1e-63 246.9 245 56.3
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.5e-61 240.0 179 70.9
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.3e-61 239.2 326 46.9
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-61 239.2 287 44.9
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-60 237.7 212 53.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.6e-60 237.3 277 49.8
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 6.2e-60 235.3 270 44.8
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.4e-56 223.4 286 43.7
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 9.3e-56 221.5 243 46.1
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.5e-55 219.5 325 41.5
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 7.9e-55 218.4 174 63.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.5e-53 213.4 273 42.1
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.0e-49 201.4 242 45.5
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.7e-49 200.7 208 53.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.4e-48 197.6 242 49.6
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 3.5e-47 193.0 122 74.6
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.7e-44 183.0 275 42.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 4.8e-44 182.6 130 66.9
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.3e-44 182.2 277 39.0
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 3.4e-42 176.4 213 48.8
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 8.5e-41 171.8 237 42.6
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 5.1e-38 162.5 159 55.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.8e-35 154.1 153 51.0
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-34 151.0 148 52.0
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.2e-33 147.1 180 45.6
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.0e-33 146.0 198 44.9
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.1e-32 144.8 151 56.3
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.0e-30 138.3 247 34.8
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.4e-29 132.9 155 44.5
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.7e-29 132.5 154 50.0
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.0e-26 124.0 279 29.0
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 7.7e-26 122.1 94 62.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 6.3e-20 102.4 181 37.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.0e-17 95.1 174 31.0
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 8.2e-12 75.5 60 58.3
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 9.1e-11 72.0 54 57.4
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 2.2e-09 67.4 193 31.6
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 3.0e-06 57.0 31 77.4


User provided reference genes

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