Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 0.0e+00 1337.8 638 100.0
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 0.0e+00 1232.6 638 92.0
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 0.0e+00 1230.3 638 91.4
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 0.0e+00 1227.2 638 91.1
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 0.0e+00 1226.1 638 90.9
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 5.2e-311 1070.5 639 80.4
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 6.2e-309 1063.5 613 81.6
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 7.6e-307 1056.6 655 78.0
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 1.1e-305 1052.7 638 79.0
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 2.1e-304 1048.5 589 82.3
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 1.5e-302 1042.3 639 77.6
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 3.3e-302 1041.2 639 77.8
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 7.4e-302 1040.0 637 78.2
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 1.2e-299 1032.7 682 73.6
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 6.7e-295 1016.9 666 74.2
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.5e-294 1015.8 552 85.9
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 1.3e-293 1012.7 540 87.0
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 2.1e-293 1011.9 537 86.4
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.1e-289 999.6 537 86.4
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 1.2e-288 996.1 559 82.8
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 4.6e-288 994.2 543 84.9
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.8e-287 992.3 552 84.1
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 2.3e-287 991.9 545 83.5
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 3.0e-287 991.5 660 72.3
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 2.5e-286 988.4 545 83.3
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 3.3e-286 988.0 680 70.4
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 5.7e-286 987.3 540 85.0
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 7.4e-286 986.9 548 83.0
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 3.7e-285 984.6 637 73.9
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.1e-284 983.0 561 80.6
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 2.4e-284 981.9 613 76.7
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 5.3e-284 980.7 548 82.1
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 1.2e-283 979.5 638 73.7
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 2.0e-283 978.8 554 81.8
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 3.4e-283 978.0 629 74.1
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 5.9e-283 977.2 639 74.3
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 7.7e-283 976.9 639 73.4
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 7.7e-283 976.9 695 69.1
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 1.3e-282 976.1 639 73.4
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.3e-282 976.1 614 75.4
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 2.2e-282 975.3 540 82.6
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 5.0e-282 974.2 634 73.0
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 5.0e-282 974.2 645 73.2
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 8.5e-282 973.4 537 82.3
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 4.2e-281 971.1 549 83.6
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 7.2e-281 970.3 650 72.6
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.2e-280 969.5 549 83.2
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 1.6e-280 969.1 644 73.6
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 1.6e-280 969.1 643 72.9
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 2.7e-280 968.4 550 80.7
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 2.7e-280 968.4 550 80.7
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 2.7e-280 968.4 593 76.7
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 6.1e-280 967.2 548 81.8
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 1.8e-279 965.7 584 76.5
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 5.1e-279 964.1 614 75.9
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 6.7e-279 963.8 792 63.6
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 2.2e-277 958.7 546 80.2
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 4.8e-277 957.6 610 76.1
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.1e-276 956.4 548 79.7
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.1e-276 956.4 574 76.5
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 3.4e-275 951.4 642 71.2
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 1.7e-274 949.1 662 72.8
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 8.5e-274 946.8 635 71.0
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 1.2e-272 943.0 648 69.4
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 4.7e-272 941.0 548 79.6
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 8.8e-271 936.8 537 79.1
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 3.3e-270 934.9 578 76.6
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 7.4e-270 933.7 553 77.6
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 4.8e-269 931.0 653 68.6
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.1e-268 929.9 553 77.0
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 3.1e-268 928.3 548 77.4
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 5.0e-266 921.0 617 70.2
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 3.6e-264 914.8 599 71.6
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 8.0e-264 913.7 848 56.7
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 1.7e-261 906.0 514 79.8
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 6.3e-261 904.0 556 75.0
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 2.9e-258 895.2 557 74.7
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 1.5e-257 892.9 498 82.7
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 2.5e-257 892.1 557 76.3
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 4.1e-252 874.8 639 66.2
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 2.9e-250 868.6 467 84.8
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 4.2e-249 864.8 646 66.6
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 1.2e-248 863.2 642 66.7
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 5.2e-247 857.8 466 82.8
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 2.0e-246 855.9 547 71.3
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 1.7e-242 842.8 540 70.4
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.2e-232 810.1 562 68.7
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 6.4e-229 797.7 432 82.9
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 7.5e-222 774.2 495 71.9
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 9.9e-198 694.1 449 74.8
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 1.9e-188 663.3 550 57.1
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 1.2e-187 660.6 442 68.6
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 2.1e-187 659.8 369 81.0
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 8.5e-173 611.3 586 53.4
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.4e-172 610.5 441 66.0
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.2e-166 590.9 539 54.9
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 2.4e-159 566.6 559 50.8
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 9.1e-159 564.7 556 49.6
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 2.0e-150 537.0 348 71.6
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 7.5e-145 518.5 381 67.7
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 2.3e-125 453.8 440 55.5
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 4.0e-114 416.4 267 72.7
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 6.4e-104 382.5 202 84.7
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.3e-101 374.8 201 82.1
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 7.6e-89 332.4 215 74.4
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 6.9e-82 309.3 181 80.1
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 3.2e-79 300.4 172 76.7
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 3.3e-76 290.4 174 78.2
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 4.0e-74 283.5 169 78.7
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.8e-53 214.9 119 82.4
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.5e-52 211.8 149 67.8
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.6e-49 201.1 106 89.6
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 2.9e-48 197.6 116 75.9
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.1e-36 159.1 127 65.4
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 6.3e-35 153.3 127 63.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 5.9e-33 146.7 138 57.2
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.0e-32 146.0 82 78.0
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.4e-29 135.6 84 76.2
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.5e-28 129.8 112 60.7
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.5e-28 129.8 112 60.7
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-19 102.1 78 70.5
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 4.2e-15 87.4 56 75.0
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.4e-12 77.8 59 62.7
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 1.3e-11 75.9 51 64.7
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 6.3e-11 73.6 41 85.4
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 7.0e-10 70.1 39 84.6
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 7.0e-10 70.1 39 84.6
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.9e-08 64.3 34 82.4
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.0e-08 63.9 85 43.5
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 5.6e-07 60.5 33 75.8


User provided reference genes

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