Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.5e-223 779.2 414 100.0
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 5.0e-166 588.2 377 82.8
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.0e-158 561.6 370 81.9
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-157 559.3 370 81.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.2e-157 558.5 370 80.3
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.0e-156 554.3 370 80.5
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-153 546.6 370 78.6
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.3e-153 544.7 370 78.6
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-152 543.9 370 79.2
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.0e-150 537.3 370 78.6
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-149 533.5 370 77.8
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 3.8e-134 482.3 370 74.3
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 4.1e-128 462.2 321 77.3
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 3.7e-121 439.1 369 64.5
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 2.3e-118 429.9 367 62.4
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 6.6e-118 428.3 376 62.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-118 428.3 367 61.0
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-118 428.3 367 61.0
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 8.6e-118 427.9 368 64.1
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.5e-117 427.2 375 62.4
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 6.2e-116 421.8 367 59.9
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.1e-115 421.0 384 58.9
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-115 420.2 384 58.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.0e-114 416.8 383 58.7
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 7.5e-114 414.8 371 61.2
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.2e-113 413.3 379 59.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 6.4e-113 411.8 379 60.2
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.1e-112 411.0 374 59.4
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.1e-111 406.8 368 61.4
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.1e-111 406.8 369 61.2
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 8.6e-110 401.4 374 58.6
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.3e-109 399.4 368 59.8
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.5e-109 397.9 380 55.8
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 5.8e-106 388.7 371 57.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.2e-105 386.7 425 52.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 8.4e-105 384.8 339 59.3
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.6e-103 379.0 377 57.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 3.9e-102 375.9 357 57.4
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.3e-101 372.9 329 61.1
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.1e-99 367.9 367 56.1
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 4.0e-99 365.9 352 56.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 4.0e-99 365.9 375 54.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 5.2e-99 365.5 369 55.6
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 6.9e-99 365.2 337 58.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.6e-98 363.2 376 56.1
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 3.4e-98 362.8 375 54.9
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.4e-98 362.5 369 55.8
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.3e-97 360.9 373 54.2
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.7e-97 360.5 370 55.9
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.7e-97 360.5 374 54.0
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 4.9e-97 359.0 320 61.6
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 5.4e-96 355.5 368 54.9
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 4.6e-95 352.4 373 54.7
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.3e-94 350.9 375 51.2
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 8.7e-94 348.2 368 55.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 8.7e-94 348.2 374 53.2
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.5e-93 347.4 368 55.2
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.5e-93 347.4 365 52.3
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.6e-93 345.5 372 52.2
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 7.3e-93 345.1 368 53.3
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 2.8e-92 343.2 357 52.9
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 8.1e-92 341.7 367 51.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.4e-91 340.9 368 52.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 9.0e-91 338.2 377 51.2
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-90 336.7 372 51.1
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 4.5e-90 335.9 371 49.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 4.5e-90 335.9 364 50.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 7.6e-90 335.1 369 51.2
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.9e-88 330.5 368 51.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.2e-87 327.8 381 49.6
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.6e-87 327.4 372 49.5
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.6e-87 327.4 370 51.9
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.1e-87 327.0 374 53.7
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 4.6e-87 325.9 372 50.3
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 4.6e-87 325.9 373 49.6
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 7.9e-87 325.1 394 47.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.0e-86 323.2 357 52.7
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 3.0e-86 323.2 372 50.5
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 3.9e-86 322.8 371 49.6
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 6.7e-86 322.0 370 51.4
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-85 320.9 373 49.9
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.5e-85 320.9 373 49.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.5e-85 320.9 373 50.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.9e-85 320.5 374 52.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.9e-85 320.5 312 55.8
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.5e-85 320.1 329 54.1
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.5e-85 320.1 363 51.0
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 3.3e-85 319.7 372 49.5
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.3e-85 319.3 372 49.5
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 4.3e-85 319.3 371 48.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 7.4e-85 318.5 373 50.1
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 7.4e-85 318.5 373 50.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.8e-84 316.6 371 49.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.8e-84 316.6 372 50.0
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 4.8e-84 315.8 355 51.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 8.1e-84 315.1 371 49.6
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 2.4e-83 313.5 372 49.5
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-81 307.8 372 48.9
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.3e-81 307.8 371 49.1
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.3e-81 307.8 366 49.5
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.2e-81 307.0 379 47.8
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 8.4e-81 305.1 372 48.7
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 8.4e-81 305.1 371 49.1
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 8.4e-81 305.1 372 48.7
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 8.4e-81 305.1 372 48.9
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.1e-80 304.7 371 49.9
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.2e-80 303.1 352 49.4
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.2e-79 301.2 372 47.8
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.1e-79 300.4 395 48.9
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.7e-79 300.1 323 52.6
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 8.7e-78 295.0 379 47.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.1e-76 290.4 370 48.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.8e-75 287.3 333 49.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.8e-75 287.3 362 44.8
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.3e-75 285.8 304 52.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.2e-74 284.6 370 43.8
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.5e-73 278.9 331 51.1
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 9.3e-72 275.0 380 44.2
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.5e-71 273.1 358 45.3
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 5.1e-70 269.2 286 52.1
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.5e-69 267.7 348 48.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 2.6e-66 256.9 277 49.5
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.9e-65 253.4 370 43.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 4.6e-63 246.1 358 42.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 5.7e-61 239.2 334 43.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 6.9e-59 232.3 198 60.1
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.6e-58 230.3 349 39.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.1e-56 224.9 374 38.8
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 7.9e-55 218.8 331 41.7
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.4e-53 213.0 137 78.1
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.8e-52 209.5 139 74.8
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.5e-50 204.5 281 45.9
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-48 196.8 131 76.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.9e-46 189.9 126 75.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.8e-38 164.5 139 66.9
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.9e-32 144.4 131 61.1
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.4e-29 133.7 382 31.7
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 6.3e-28 129.4 397 30.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.4e-27 127.5 157 47.8
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.3e-25 120.9 262 33.6
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 5.5e-24 116.3 376 28.7
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.0e-23 112.5 268 31.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.6e-21 107.5 101 51.5
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.4e-21 106.7 245 31.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.9e-17 94.0 368 26.4
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.8e-17 93.6 408 24.8
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 6.8e-14 82.8 64 62.5
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.5e-13 81.6 115 45.2
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.9e-12 77.4 128 32.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.8e-10 69.3 89 42.7
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.8e-10 69.3 89 42.7
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 1.9e-08 64.7 83 43.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.1e-07 61.2 82 36.6
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.6e-07 60.5 59 55.9
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 4.7e-07 60.1 63 55.6
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 8.0e-07 59.3 55 56.4
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.1e-06 58.9 63 52.4
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.4e-06 58.5 55 54.5


User provided reference genes

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