Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0781 Durio zibethinus HOM05D005582 ORTHO05D007028 4.8e-304 1047.0 507 100.0
Duzib151G1162 Durio zibethinus HOM05D005582 ORTHO05D007028 5.7e-273 943.7 515 91.1
Thecc.04G310500 Theobroma cacao HOM05D005582 ORTHO05D007028 3.6e-251 871.3 513 84.0
Gohir.A09G067200 Gossypium hirsutum HOM05D005582 ORTHO05D007028 4.1e-247 857.8 515 82.1
Gohir.D09G066800 Gossypium hirsutum HOM05D005582 ORTHO05D007028 5.4e-247 857.4 515 82.1
Gorai.006G081300 Gossypium raimondii HOM05D005582 ORTHO05D007028 1.6e-246 855.9 515 82.1
Atru.chr11.54 Acer truncatum HOM05D005582 ORTHO05D007028 5.4e-215 751.1 516 71.1
Ciclev10004134m.g Citrus clementina HOM05D005582 ORTHO05D007028 1.6e-211 739.6 516 70.5
Cfa015717 Carpinus fangiana HOM05D005582 ORTHO05D007028 4.8e-211 738.0 516 69.8
QL06p013845 Quercus lobata HOM05D005582 ORTHO05D007028 1.2e-209 733.4 515 69.7
QL93p1872_0012 Quercus lobata HOM05D005582 ORTHO05D007028 1.2e-209 733.4 515 69.7
Dinv29525 Davidia involucrata HOM05D005582 ORTHO05D007028 2.0e-209 732.6 516 69.4
GSVIVG01017603001 Vitis vinifera HOM05D005582 ORTHO05D007028 2.0e-209 732.6 516 69.2
Potri.010G153300 Populus trichocarpa HOM05D005582 ORTHO05D007028 5.8e-209 731.1 517 68.7
GSVIVG01017662001 Vitis vinifera HOM05D005582 ORTHO05D007028 5.8e-209 731.1 516 69.0
CiPaw.02G071000 Carya illinoinensis HOM05D005582 ORTHO05D007028 2.7e-206 722.2 516 68.4
TWI53G0357 Tripterygium wilfordii HOM05D005582 ORTHO05D007028 3.3e-204 715.3 518 68.1
Cpa.g.sc146.39 Carica papaya HOM05D005582 ORTHO05D007028 1.3e-203 713.4 523 68.5
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.1e-203 712.6 522 67.6
Sabra10G0117900 Salix brachista HOM05D005582 ORTHO05D007028 3.7e-203 711.8 517 67.3
Prupe.1G108200 Prunus persica HOM05D005582 ORTHO05D007028 4.8e-203 711.4 515 68.5
FAN07G0038 Fragaria x ananassa HOM05D005582 ORTHO05D007028 3.2e-199 698.7 515 66.4
Actinidia01057 Actinidia chinensis HOM05D005582 ORTHO05D007028 9.3e-199 697.2 508 66.7
Manes.15G004000 Manihot esculenta HOM05D005582 ORTHO05D007028 6.0e-198 694.5 516 66.5
FAN12G2136 Fragaria x ananassa HOM05D005582 ORTHO05D007028 1.1e-196 690.3 515 64.9
MD13G1143700 Malus domestica HOM05D005582 ORTHO05D007028 2.5e-196 689.1 515 65.8
VMungo0720G3059 Vigna mungo HOM05D005582 ORTHO05D007028 6.2e-195 684.5 516 65.5
RcHm_v2.0_Chr4g0426871 Rosa chinensis HOM05D005582 ORTHO05D007028 2.4e-194 682.6 516 65.5
CsaV3_6G000150 Cucumis sativus L. HOM05D005582 ORTHO05D007028 9.0e-194 680.6 514 65.8
Eucgr.B02209 Eucalyptus grandis HOM05D005582 ORTHO05D007028 1.2e-193 680.2 516 64.7
Phvul.007G062300 Phaseolus vulgaris HOM05D005582 ORTHO05D007028 1.2e-193 680.2 517 64.6
MELO3C021237.2 Cucumis melo HOM05D005582 ORTHO05D007028 1.5e-193 679.9 514 65.4
TAR362G0979 Trochodendron aralioides HOM05D005582 ORTHO05D007028 2.6e-193 679.1 516 65.1
Glyma.20G150800 Glycine max HOM05D005582 ORTHO05D007028 3.4e-193 678.7 517 65.2
Glyma.10G243400 Glycine max HOM05D005582 ORTHO05D007028 1.0e-192 677.2 517 64.8
vmacro08001 Vaccinium macrocarpon HOM05D005582 ORTHO05D007028 2.9e-192 675.6 515 64.5
arahy.Tifrunner.gnm1.ann1.6ZCT8S Arachis hypogaea HOM05D005582 ORTHO05D007028 3.8e-192 675.2 518 64.3
arahy.Tifrunner.gnm1.ann1.ZZ97E1 Arachis hypogaea HOM05D005582 ORTHO05D007028 3.8e-192 675.2 518 64.1
Lalb_Chr06g0160761 Lupinus albus HOM05D005582 ORTHO05D007028 4.9e-192 674.9 517 64.4
CSS0025323 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 3.2e-191 672.2 549 61.9
CANSAT01G1159 Cannabis sativa HOM05D005582 ORTHO05D007028 3.2e-191 672.2 517 64.2
Medtr1g102710 Medicago truncatula HOM05D005582 ORTHO05D007028 2.7e-190 669.1 518 64.7
Lj5g0009067 Lotus japonicus HOM05D005582 ORTHO05D007028 1.8e-189 666.4 525 63.4
ClCG06G004260 Citrullus lanatus HOM05D005582 ORTHO05D007028 3.9e-189 665.2 508 65.4
Psat6g203520 Pisum sativum HOM05D005582 ORTHO05D007028 3.9e-189 665.2 517 63.8
Ca_10846_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 9.7e-188 660.6 516 64.3
Rhsim04G0247200 Rhododendron simsii HOM05D005582 ORTHO05D007028 2.2e-187 659.4 503 64.6
Sed0007110 Sechium edule HOM05D005582 ORTHO05D007028 6.3e-187 657.9 516 63.0
Nn4g25411 Nelumbo nucifera HOM05D005582 ORTHO05D007028 1.1e-186 657.1 515 62.5
Aqoxy5G02775 Aquilegia oxysepala HOM05D005582 ORTHO05D007028 5.3e-186 654.8 520 61.3
PSO170G3214 Papaver somniferum HOM05D005582 ORTHO05D007028 6.9e-186 654.4 514 62.1
PGR031G2985 Punica granatum HOM05D005582 ORTHO05D007028 1.7e-184 649.8 516 61.4
TPR.G26104 Trifolium pratense HOM05D005582 ORTHO05D007028 1.9e-183 646.4 510 64.3
Cc03_g00260 Coffea canephora HOM05D005582 ORTHO05D007028 1.6e-182 643.3 515 61.4
Peaxi162Scf01194g00137 Petunia axillaris HOM05D005582 ORTHO05D007028 2.3e-181 639.4 515 61.4
Sc25g0001750 Simmondsia chinensis HOM05D005582 ORTHO05D007028 7.4e-180 634.4 516 60.3
Nitab4.5_0000895g0160 Nicotiana tabacum HOM05D005582 ORTHO05D007028 6.5e-176 621.3 507 60.9
THA.LOC104818852 Tarenaya hassleriana HOM05D005582 ORTHO05D007028 8.5e-176 620.9 516 61.0
Nitab4.5_0004665g0020 Nicotiana tabacum HOM05D005582 ORTHO05D007028 2.3e-173 612.8 507 60.2
Migut.N00012 Erythranthe guttata HOM05D005582 ORTHO05D007028 1.5e-172 610.1 519 57.4
Solyc12g099010.3 Solanum lycopersicum HOM05D005582 ORTHO05D007028 6.3e-171 604.7 515 59.4
Sopen12g033750 Solanum pennellii HOM05D005582 ORTHO05D007028 1.1e-170 604.0 515 59.2
MSTRG.19398 Avicennia marina HOM05D005582 ORTHO05D007028 2.4e-170 602.8 516 58.1
EL10Ac3g06266 Beta vulgaris HOM05D005582 ORTHO05D007028 1.2e-169 600.5 510 58.0
Oeu022697.1 Olea europaea HOM05D005582 ORTHO05D007028 3.5e-169 599.0 505 58.8
AUR62002565 Chenopodium quinoa HOM05D005582 ORTHO05D007028 5.9e-169 598.2 511 57.1
DCAR_023392 Daucus carota HOM05D005582 ORTHO05D007028 2.1e-166 589.7 542 55.4
HanXRQChr05g0148391 Helianthus annuus HOM05D005582 ORTHO05D007028 3.0e-165 585.9 516 56.2
SGA_v2.0_scaffold227G43203 Striga asiatica HOM05D005582 ORTHO05D007028 1.1e-164 583.9 516 57.4
FvH4_4g21250 Fragaria vesca HOM05D005582 ORTHO05D007028 5.0e-160 568.5 457 61.5
ATR0796G139 Amborella trichopoda HOM05D005582 ORTHO05D007028 6.5e-160 568.2 517 55.9
ECA246G0223 Erigeron canadensis HOM05D005582 ORTHO05D007028 3.0e-157 559.3 516 54.8
Thhalv10012423m.g Eutrema salsugineum HOM05D005582 ORTHO05D007028 1.5e-156 557.0 519 55.9
BcaB08g36669 Brassica carinata HOM05D005582 ORTHO05D007028 4.4e-156 555.4 522 56.7
Lj3C839G18 Lonicera japonica HOM05D005582 ORTHO05D007028 4.1e-154 548.9 512 56.2
C09p57960 Brassica napus HOM05D005582 ORTHO05D007028 1.0e-152 544.3 522 56.5
BolC9t58663H Brassica oleracea HOM05D005582 ORTHO05D007028 1.0e-152 544.3 522 56.5
BraA10t44167Z Brassica rapa HOM05D005582 ORTHO05D007028 1.0e-152 544.3 520 55.0
A10p21030 Brassica napus HOM05D005582 ORTHO05D007028 2.2e-152 543.1 520 55.0
AT5G18525 Arabidopsis thaliana HOM05D005582 ORTHO05D007028 2.9e-152 542.7 518 55.4
HPP92_010030 Vanilla planifolia HOM05D005582 ORTHO05D007028 1.1e-151 540.8 515 51.8
Sp6g25800 Schrenkiella parvula HOM05D005582 ORTHO05D007028 9.4e-151 537.7 519 54.7
Hund12246 Selenicereus undatus HOM05D005582 ORTHO05D007028 8.0e-150 534.6 463 57.2
AUR62029987 Chenopodium quinoa HOM05D005582 ORTHO05D007028 2.3e-149 533.1 470 55.7
Aa31LG11G11190 Aethionema arabicum HOM05D005582 ORTHO05D007028 3.4e-148 529.3 537 52.5
Carub.0006s1680 Capsella rubella HOM05D005582 ORTHO05D007028 9.8e-148 527.7 519 54.7
Ah.07g203770 Amaranthus hybridus HOM05D005582 ORTHO05D007028 3.1e-146 522.7 460 56.3
BcaB08g36665 Brassica carinata HOM05D005582 ORTHO05D007028 5.4e-146 521.9 489 56.9
Zm00001eb131030 Zea mays HOM05D005582 ORTHO05D007028 8.6e-144 514.6 515 50.7
Migut.K01509 Erythranthe guttata HOM05D005582 ORTHO05D007028 1.7e-139 500.4 507 50.9
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 4.9e-139 498.8 424 63.4
Lsat_1_v5_gn_6_117861 Lactuca sativa HOM05D001037 ORTHO05D007028 6.4e-123 445.3 483 49.7
BcaC04g18671 Brassica carinata HOM05D005582 ORTHO05D007028 1.7e-115 420.6 460 51.7
CSS0001073 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 6.4e-115 418.7 417 54.0
AL6G29800 Arabidopsis lyrata HOM05D005582 ORTHO05D007028 1.4e-114 417.5 502 46.8
MBI18_g09609_MAGBIO Magnolia biondii HOM05D005582 ORTHO05D007028 3.2e-98 363.2 309 60.5
Mapoly0075s0059 Marchantia polymorpha HOM05D005582 ORTHO05D007028 3.1e-93 346.7 533 38.1
SMO203G0276 Selaginella moellendorffii HOM05D005582 ORTHO05D007028 5.5e-90 335.9 521 37.6
DCAR_023431 Daucus carota HOM05D005582 ORTHO05D007028 2.7e-81 307.0 337 47.8
unitig_26.g10616 Utricularia gibba HOM05D005582 ORTHO05D007028 3.4e-68 263.5 306 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3353 Anthoceros agrestis HOM05D005582 ORTHO05D007028 5.9e-68 262.7 525 32.6
CDE02G0728 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 6.7e-64 249.2 251 51.0
CDE02G3337 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 3.1e-61 240.4 203 58.1
SEGI_37408 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 8.5e-51 205.7 211 50.7
CBR_g49232 Chara braunii HOM05D005582 ORTHO05D007028 2.6e-47 194.1 522 28.0
Migut.K00927 Erythranthe guttata HOM05D005582 ORTHO05D007028 7.0e-29 132.9 125 54.4
SEGI_01668 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 1.6e-25 121.7 88 61.4
SEGI_29964 Sequoiadendron giganteum HOM05D000557 ORTHO05D007028 2.0e-23 114.8 103 51.5
SEGI_19987 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 2.2e-22 111.3 104 55.8
SEGI_30621 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 2.2e-22 111.3 104 55.8
HPP92_015254 Vanilla planifolia HOM05D005582 ORTHO05D007028 8.3e-22 109.4 106 49.1
Nitab4.5_0006377g0020 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.0e-19 102.4 82 56.1
PRCOL_00005869 Prasinoderma coloniale HOM05D005582 ORTHO05D007028 2.1e-17 94.7 416 23.6


User provided reference genes

Program Settings