Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 3.5e-115 418.3 212 100.0
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 2.3e-106 389.0 212 93.4
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 5.1e-106 387.9 212 92.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.2e-93 345.9 203 89.2
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.2e-93 345.9 203 89.2
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.9e-93 345.5 203 88.7
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 3.8e-93 345.1 212 83.5
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-92 343.2 203 87.7
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 4.2e-92 341.7 216 83.8
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 5.4e-92 341.3 213 83.1
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 7.1e-92 340.9 213 83.1
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 9.3e-92 340.5 212 82.5
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.6e-91 339.7 213 82.6
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.7e-91 339.0 212 83.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 6.0e-91 337.8 210 81.9
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 7.8e-91 337.4 210 81.4
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 6.6e-90 334.3 211 82.0
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 8.7e-90 334.0 214 82.2
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.9e-89 332.8 212 82.1
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.5e-89 332.4 211 80.6
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 4.3e-89 331.6 213 80.8
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 7.3e-89 330.9 213 78.9
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 9.6e-89 330.5 217 82.0
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.3e-88 330.1 213 80.8
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.3e-88 330.1 214 80.4
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.6e-88 329.7 214 81.8
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.6e-88 329.7 221 78.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.6e-88 329.7 213 80.8
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 2.8e-88 328.9 212 81.6
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.8e-88 328.9 210 81.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.1e-87 327.0 214 79.9
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.1e-87 327.0 212 79.2
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.4e-87 326.6 213 80.8
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.4e-87 326.6 215 80.0
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.4e-87 326.6 214 79.0
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.4e-87 325.9 214 79.4
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.4e-87 325.9 222 76.1
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.1e-87 325.5 212 80.7
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 4.0e-87 325.1 215 80.0
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 9.0e-87 323.9 216 79.6
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 7.6e-86 320.9 213 80.3
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 7.6e-86 320.9 216 78.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.9e-86 320.5 216 77.8
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.9e-86 320.5 216 77.8
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 9.9e-86 320.5 213 80.8
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.3e-85 320.1 214 78.5
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.3e-85 320.1 214 77.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.7e-85 319.7 211 80.6
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-85 319.7 214 80.8
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.9e-85 318.9 213 79.8
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 2.9e-85 318.9 218 78.4
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.8e-85 318.5 213 80.3
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 3.8e-85 318.5 218 77.5
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.8e-85 318.5 212 80.2
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 3.8e-85 318.5 214 77.1
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 6.4e-85 317.8 216 77.3
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.4e-85 317.8 216 77.3
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 8.4e-85 317.4 216 77.8
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.4e-85 317.4 216 77.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 8.4e-85 317.4 214 76.2
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.1e-84 317.0 215 78.1
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.4e-84 316.6 216 78.2
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.4e-84 316.6 212 77.8
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.4e-84 316.6 214 77.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.4e-84 316.6 214 79.4
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.9e-84 316.2 214 79.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.9e-84 316.2 213 76.1
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.4e-84 315.8 216 79.2
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.4e-84 315.8 214 79.0
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.2e-84 315.5 218 78.9
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.2e-84 315.5 216 79.6
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.2e-84 315.5 212 79.2
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 3.2e-84 315.5 214 79.0
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.2e-84 315.1 214 78.5
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 5.4e-84 314.7 227 75.8
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 5.4e-84 314.7 216 77.8
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 2.1e-83 312.8 219 77.2
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.6e-83 311.6 214 77.1
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.0e-82 310.5 225 76.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.3e-82 310.1 212 77.8
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.3e-82 310.1 211 77.7
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.7e-82 309.7 222 74.3
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.7e-82 309.7 212 77.4
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 6.6e-82 307.8 215 75.8
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.1e-81 307.0 214 78.0
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.5e-81 306.6 213 76.1
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 4.3e-81 305.1 213 73.2
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 4.3e-81 305.1 212 74.5
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 9.6e-81 303.9 195 83.6
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 9.6e-81 303.9 216 77.3
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 9.6e-81 303.9 217 75.6
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.1e-80 302.8 216 76.4
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.8e-80 302.4 212 74.5
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.8e-79 299.7 213 76.1
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.4e-79 299.3 212 73.6
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 4.0e-79 298.5 217 74.2
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.0e-79 297.4 203 77.3
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.5e-78 296.6 213 73.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 4.5e-78 295.0 212 73.1
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 4.5e-78 295.0 213 74.2
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.2e-77 292.7 186 82.3
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 2.2e-77 292.7 211 73.5
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.8e-77 292.0 202 77.2
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 6.4e-77 291.2 215 72.1
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 6.4e-77 291.2 213 72.8
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 8.4e-77 290.8 212 74.5
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.4e-76 290.0 213 72.3
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.4e-76 290.0 211 73.0
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.9e-76 289.7 213 72.8
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.2e-76 288.9 213 73.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.2e-76 288.9 215 72.6
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 4.2e-76 288.5 214 72.9
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 4.2e-76 288.5 212 73.6
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 9.3e-76 287.3 213 71.8
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 9.3e-76 287.3 212 71.7
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.6e-75 286.6 210 71.4
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.1e-75 286.2 214 74.8
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 3.5e-75 285.4 168 83.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 4.6e-75 285.0 190 76.8
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 6.0e-75 284.6 210 73.8
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 7.9e-75 284.3 216 71.3
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.0e-74 283.9 215 71.2
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.3e-74 282.7 206 72.3
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 2.3e-74 282.7 216 71.3
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 3.0e-74 282.3 215 71.2
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 8.7e-74 280.8 211 70.1
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.9e-73 279.6 212 71.2
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 7.4e-73 277.7 212 71.7
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 7.4e-73 277.7 212 71.7
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 9.0e-71 270.8 216 70.8
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.2e-70 270.4 146 87.0
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.5e-70 270.0 212 69.3
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.0e-70 269.6 215 70.2
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.3e-69 266.9 175 76.6
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 6.5e-69 264.6 212 67.5
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.5e-68 262.7 201 71.1
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 3.2e-68 262.3 209 65.6
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.6e-67 260.0 149 83.9
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.1e-67 259.6 154 81.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.6e-67 258.5 210 65.7
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.3e-66 256.1 209 65.6
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 6.7e-66 254.6 148 83.1
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 4.6e-59 231.9 136 81.6
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 6.1e-59 231.5 142 78.9
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.5e-57 226.9 201 59.7
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 5.7e-57 224.9 195 61.5
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.8e-56 222.6 214 62.1
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.0e-54 216.5 214 61.7
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 5.5e-44 181.8 212 53.8
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 4.4e-41 172.2 92 88.0
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.3e-32 144.1 75 92.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.5e-17 94.0 109 56.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 2.6e-17 93.2 109 56.9
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 1.7e-16 90.5 109 56.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 9.5e-12 74.7 85 51.8


User provided reference genes

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