Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 5.2e-176 620.9 310 100.0
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 2.2e-118 429.5 299 73.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.9e-118 429.1 300 73.7
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 5.8e-111 404.8 301 69.8
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 6.5e-102 374.8 307 65.5
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.6e-100 370.2 307 64.2
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.0e-99 367.5 307 65.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 9.7e-90 334.3 306 57.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.3e-89 334.0 316 57.0
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 8.2e-89 331.3 311 56.9
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.7e-86 323.6 315 55.2
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 6.5e-86 321.6 301 54.8
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 4.2e-85 318.9 303 54.1
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.7e-84 316.2 309 54.7
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 5.2e-83 312.0 306 51.0
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 8.8e-83 311.2 303 55.1
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.1e-82 310.8 309 54.0
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.7e-81 307.0 308 53.2
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.8e-81 306.2 304 54.3
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 2.8e-81 306.2 299 52.2
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.4e-80 303.1 308 52.3
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.4e-80 303.1 308 52.3
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.4e-80 303.1 308 52.3
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 2.4e-80 303.1 304 51.0
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 5.3e-80 302.0 308 51.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 9.1e-80 301.2 302 54.3
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 1.2e-79 300.8 300 51.7
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 7.7e-79 298.1 294 53.7
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 4.2e-77 292.4 302 52.3
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 4.2e-77 292.4 291 50.2
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 7.2e-77 291.6 300 50.3
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 8.0e-76 288.1 304 50.0
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 1.4e-75 287.3 311 50.2
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 4.0e-75 285.8 314 49.7
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 6.7e-75 285.0 305 50.2
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.2e-74 284.3 293 51.2
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 4.4e-74 282.3 278 56.1
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 3.7e-73 279.3 299 49.2
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.2e-71 274.2 293 47.8
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 1.6e-71 273.9 289 49.1
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 2.0e-71 273.5 302 47.0
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 7.7e-71 271.6 290 49.7
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.0e-70 271.2 299 44.8
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.0e-70 271.2 296 48.3
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.9e-70 269.6 293 49.5
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 5.0e-70 268.9 290 48.6
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 8.5e-70 268.1 299 49.5
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 2.5e-69 266.5 299 44.5
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 5.5e-69 265.4 300 44.7
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 7.2e-69 265.0 315 46.0
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 9.4e-69 264.6 295 46.8
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.1e-68 263.5 299 44.8
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 2.1e-68 263.5 299 47.2
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 3.6e-68 262.7 307 47.6
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 3.6e-68 262.7 303 47.2
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 6.1e-68 261.9 290 48.6
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.5e-66 257.3 302 46.4
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 2.2e-65 253.4 305 46.2
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 3.7e-65 252.7 307 45.6
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.4e-64 250.8 304 45.1
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 5.4e-64 248.8 307 44.6
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 9.1e-64 248.1 301 45.5
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.7e-63 246.5 309 45.3
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 4.5e-63 245.7 304 45.1
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 3.8e-62 242.7 309 41.7
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.9e-61 240.4 301 44.9
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 9.5e-61 238.0 276 46.0
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.2e-60 237.7 312 42.9
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.6e-60 237.3 311 44.4
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.3e-59 233.4 322 42.5
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.5e-58 230.7 305 43.9
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 2.6e-58 229.9 303 41.6
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.4e-58 229.6 206 52.4
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 9.8e-58 228.0 299 43.1
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 9.8e-58 228.0 299 43.1
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 9.8e-58 228.0 299 43.1
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.7e-57 227.3 286 45.8
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 4.9e-57 225.7 304 40.5
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.1e-56 224.6 303 43.6
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 4.1e-56 222.6 293 42.7
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 4.1e-56 222.6 293 42.7
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 7.0e-56 221.9 299 42.5
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 7.0e-56 221.9 328 40.5
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.2e-55 221.1 303 41.6
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.0e-54 218.0 293 43.0
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.3e-54 217.6 210 48.1
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 2.9e-54 216.5 281 46.3
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 5.0e-54 215.7 303 41.3
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 5.0e-54 215.7 247 44.5
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.2e-52 211.1 211 48.3
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.4e-51 207.6 276 44.9
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.4e-51 207.6 286 40.6
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 2.0e-50 203.8 280 40.7
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.6e-50 203.4 268 43.7
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 9.8e-50 201.4 206 55.3
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.4e-48 197.6 194 49.5
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 6.6e-46 188.7 233 43.3
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 3.6e-44 183.0 130 63.1
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 6.8e-43 178.7 305 38.0
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 8.9e-43 178.3 273 39.6
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.0e-42 177.2 291 39.9
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 4.1e-40 169.5 204 39.7
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 2.8e-36 156.8 176 37.5
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.9e-33 146.7 130 53.8
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 8.3e-33 145.2 155 45.2
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 1.4e-32 144.4 187 40.1
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 4.1e-32 142.9 154 44.8
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 5.4e-32 142.5 147 46.3
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.5e-31 139.8 164 43.9
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 7.8e-31 138.7 175 37.7
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 3.1e-27 126.7 179 37.4
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 5.8e-26 122.5 101 53.5
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 1.9e-24 117.5 93 55.9
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 7.1e-24 115.5 168 36.9
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 9.2e-24 115.2 114 50.0
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 1.7e-22 110.9 309 29.8
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 9.6e-21 105.1 112 44.6
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 9.6e-21 105.1 112 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 4.7e-20 102.8 131 35.9
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.4e-18 96.7 191 33.0
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 4.4e-18 96.3 96 46.9
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 7.6e-18 95.5 108 46.3
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 7.6e-18 95.5 108 46.3
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 6.4e-17 92.4 109 44.0
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 8.4e-17 92.0 109 44.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 8.4e-17 92.0 109 44.0
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 8.4e-17 92.0 108 45.4
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 8.4e-17 92.0 80 52.5
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-16 91.7 108 44.4
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-16 91.3 106 44.3
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.5e-13 81.3 155 31.0
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 2.5e-13 80.5 98 41.8
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 7.3e-13 79.0 61 59.0
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 1.7e-09 67.8 112 35.7


User provided reference genes

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