Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 9.6e-68 260.0 128 100.0
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.4e-42 175.6 116 76.7
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 2.4e-42 175.6 116 76.7
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 7.7e-41 170.6 116 74.1
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 7.2e-39 164.1 102 77.5
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 6.7e-37 157.5 105 70.5
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 3.0e-29 132.1 95 66.3
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 6.7e-29 131.0 126 54.8
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 5.3e-26 121.3 123 48.0
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 1.2e-25 120.2 121 52.1
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 2.6e-25 119.0 109 54.1
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.0e-24 117.1 113 54.9
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 1.3e-24 116.7 119 49.6
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 1.9e-23 112.8 109 53.2
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 3.2e-23 112.1 124 44.4
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 3.2e-23 112.1 124 44.4
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 5.5e-23 111.3 125 44.8
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 7.2e-23 110.9 130 45.4
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 7.2e-23 110.9 130 43.8
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 7.2e-23 110.9 101 55.4
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 9.4e-23 110.5 102 54.9
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 1.2e-22 110.2 109 50.5
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 1.2e-22 110.2 130 43.1
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 1.6e-22 109.8 128 43.8
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 1.6e-22 109.8 128 43.8
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 1.6e-22 109.8 112 50.0
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 2.1e-22 109.4 128 43.8
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 2.7e-22 109.0 102 52.9
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 3.6e-22 108.6 128 43.8
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 4.7e-22 108.2 96 53.1
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 6.1e-22 107.8 113 48.7
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 6.1e-22 107.8 100 49.0
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 8.0e-22 107.5 124 44.4
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 8.0e-22 107.5 124 42.7
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.0e-21 107.1 113 48.7
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 1.8e-21 106.3 128 43.0
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 1.8e-21 106.3 128 43.0
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 1.8e-21 106.3 120 44.2
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 2.3e-21 105.9 117 46.2
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 4.0e-21 105.1 96 55.2
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 6.7e-21 104.4 128 42.2
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.1e-20 103.6 122 42.6
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 1.5e-20 103.2 108 48.1
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 2.6e-20 102.4 94 51.1
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 2.6e-20 102.4 126 43.7
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 9.7e-20 100.5 125 42.4
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 9.7e-20 100.5 125 42.4
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 1.3e-19 100.1 124 43.5
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 1.7e-19 99.8 103 46.6
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 1.7e-19 99.8 103 46.6
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.7e-19 99.8 91 51.6
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 2.2e-19 99.4 88 53.4
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 2.2e-19 99.4 96 44.8
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.8e-19 99.0 103 49.5
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 3.7e-19 98.6 117 47.9
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 3.7e-19 98.6 90 51.1
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 4.8e-19 98.2 108 49.1
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 4.8e-19 98.2 106 44.3
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 4.8e-19 98.2 127 41.7
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 6.3e-19 97.8 92 46.7
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 6.3e-19 97.8 92 47.8
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 6.3e-19 97.8 116 47.4
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 8.2e-19 97.4 131 40.5
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 1.1e-18 97.1 122 45.1
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.1e-18 97.1 91 49.5
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.4e-18 96.7 120 45.8
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.8e-18 96.3 122 45.1
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.4e-18 95.9 101 49.5
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 2.4e-18 95.9 111 43.2
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 2.4e-18 95.9 127 40.9
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 3.1e-18 95.5 123 40.7
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 4.1e-18 95.1 88 54.5
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 7.0e-18 94.4 92 52.2
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 9.1e-18 94.0 97 49.5
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 1.6e-17 93.2 88 54.5
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 2.0e-17 92.8 88 51.1
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 2.0e-17 92.8 112 44.6
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 4.5e-17 91.7 79 49.4
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 4.5e-17 91.7 125 42.4
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 4.5e-17 91.7 120 41.7
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 4.5e-17 91.7 120 39.2
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 1.7e-16 89.7 104 42.3
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 2.2e-16 89.4 89 49.4
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 2.9e-16 89.0 134 39.6
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 3.8e-16 88.6 88 48.9
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 1.1e-15 87.0 112 40.2
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.5e-15 86.7 81 54.3
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 3.2e-15 85.5 90 42.2
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 4.2e-15 85.1 95 43.2
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 1.0e-13 80.5 83 50.6
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 1.4e-13 80.1 96 46.9
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 1.2e-12 77.0 92 38.0
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 2.0e-12 76.3 92 38.0
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 1.7e-11 73.2 87 46.0
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 2.8e-11 72.4 75 44.0
Os01g0607100 Oryza sativa ssp. japonica HOM05D032292 ORTHO05D009025 1.0e-08 63.9 96 38.5
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 1.1e-07 60.5 75 37.3
Zm00001eb408970 Zea mays HOM05D032292 ORTHO05D009025 7.2e-07 57.8 84 39.3


User provided reference genes

Program Settings