Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 0.0e+00 1120.5 577 100.0
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.2e-228 795.8 593 74.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 2.1e-207 726.1 644 65.4
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 4.2e-171 605.5 563 63.9
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.4e-166 589.7 580 61.7
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 9.1e-166 587.8 580 61.2
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.7e-162 575.5 612 57.4
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.3e-161 573.2 612 57.4
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.0e-156 555.4 580 58.3
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.6e-146 523.9 602 55.8
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.3e-143 511.9 590 53.7
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.1e-142 509.6 590 53.6
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.6e-138 496.1 590 52.5
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 3.4e-104 383.3 603 45.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.1e-94 351.7 470 48.5
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.9e-94 350.9 597 42.5
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.9e-91 340.9 656 41.2
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.2e-80 305.1 402 47.5
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.9e-79 300.4 576 41.3
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.4e-78 298.1 366 49.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.9e-78 297.7 538 41.6
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 4.3e-75 286.6 525 40.6
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 5.6e-75 286.2 570 40.2
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 4.8e-74 283.1 628 37.4
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.4e-73 281.6 397 46.1
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.2e-72 278.5 610 38.4
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.2e-72 278.5 456 43.4
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.3e-71 275.0 399 45.1
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 1.6e-69 268.1 402 44.3
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 6.0e-69 266.2 508 40.7
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.9e-68 263.5 399 45.1
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 6.7e-68 262.7 417 43.6
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.7e-68 262.7 508 40.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.3e-66 258.5 522 39.3
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 4.8e-66 256.5 406 42.6
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.2e-64 251.9 589 37.2
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.2e-64 251.9 591 36.7
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.0e-64 251.1 345 46.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.0e-64 251.1 497 40.2
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.0e-64 251.1 364 45.9
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 4.5e-64 250.0 506 39.7
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.2e-63 247.7 472 38.8
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.9e-63 246.5 436 41.5
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.2e-62 243.4 604 35.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.5e-62 243.0 497 39.8
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.3e-62 242.3 473 39.3
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 2.7e-61 240.7 426 41.3
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.3e-60 238.4 383 43.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 3.9e-60 236.9 383 42.8
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.1e-60 236.5 357 45.7
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 1.9e-59 234.6 569 35.1
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 3.1e-57 227.3 586 34.8
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 9.0e-57 225.7 277 50.9
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.2e-56 225.3 269 51.7
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.5e-56 224.9 304 47.4
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.4e-56 223.8 288 49.7
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 7.7e-56 222.6 560 35.2
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.7e-55 221.5 416 41.1
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.9e-54 218.0 277 49.8
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 3.6e-53 213.8 521 37.2
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.0e-52 212.2 400 38.0
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.0e-52 212.2 289 47.8
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.9e-52 210.3 588 31.6
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 8.8e-52 209.1 171 64.3
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.5e-51 208.4 601 33.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.1e-49 202.2 617 32.7
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-49 201.8 237 51.5
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.8e-49 201.4 398 38.4
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.1e-49 200.3 334 42.2
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 5.3e-49 199.9 328 41.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 7.7e-48 196.1 468 35.7
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.2e-46 190.7 560 33.8
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.2e-45 188.7 575 31.1
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.7e-45 186.8 232 49.6
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.4e-43 179.5 409 37.2
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 9.7e-43 179.1 409 37.2
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 3.1e-41 174.1 536 32.8
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 4.1e-41 173.7 384 36.2
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.9e-38 164.9 396 34.6
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.2e-38 163.7 604 31.1
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 7.2e-38 162.9 407 33.9
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 9.4e-38 162.5 390 37.4
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.6e-37 161.8 521 30.9
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.6e-37 161.8 374 37.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 2.3e-36 157.9 541 32.3
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.2e-36 156.8 500 33.0
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.3e-34 152.1 227 45.8
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.8e-34 151.0 392 34.7
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.8e-34 151.0 537 30.9
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 9.1e-33 146.0 241 45.6
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 8.5e-31 139.4 491 30.1
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.1e-29 134.8 243 40.7
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 2.1e-29 134.8 229 42.4
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.2e-27 129.0 316 35.8
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.3e-26 125.6 249 40.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.1e-25 122.5 129 50.4
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.8e-25 121.7 295 34.9
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 7.0e-25 119.8 347 34.0
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 9.1e-25 119.4 244 37.3
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 5.5e-22 110.2 373 32.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.7e-21 107.1 242 33.9
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 4.4e-19 100.5 399 30.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 8.3e-18 96.3 138 45.7
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 4.1e-17 94.0 163 39.3
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.6e-16 92.0 156 39.7
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 5.9e-16 90.1 127 43.3
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 7.7e-16 89.7 159 36.5
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 2.3e-15 88.2 167 38.9
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 6.6e-15 86.7 143 37.1
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.5e-14 85.5 119 44.5
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.9e-14 85.1 119 44.5
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.9e-14 85.1 119 44.5
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.9e-14 85.1 112 45.5
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 3.6e-13 80.9 119 43.7
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 3.6e-13 80.9 56 66.1
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 1.8e-12 78.6 327 28.7
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 5.2e-12 77.0 358 26.3
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 8.9e-12 76.3 197 30.5
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-11 75.9 395 29.1
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.5e-11 75.5 254 29.1
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.4e-11 74.3 121 43.0
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 3.4e-11 74.3 157 36.9
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 3.4e-11 74.3 250 29.2
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 7.5e-11 73.2 121 41.3
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 7.5e-11 73.2 326 27.3
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.2e-10 71.6 154 37.0
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 2.4e-09 68.2 154 36.4
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.2e-09 67.8 117 35.0
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.7e-08 64.7 284 27.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 3.5e-08 64.3 331 25.7
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-07 62.8 70 51.4
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.7e-07 62.0 522 23.4
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 7.3e-06 56.6 73 41.1


User provided reference genes

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