Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 0.0e+00 1124.0 560 100.0
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.0e-270 936.4 660 74.4
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.1e-264 916.4 665 72.6
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.0e-263 912.1 658 72.6
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.0e-262 909.8 665 72.2
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.1e-237 826.6 606 71.8
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 6.6e-230 800.8 657 62.7
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 2.5e-229 798.9 666 63.4
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 9.9e-226 786.9 661 62.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.9e-224 782.7 657 62.1
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 4.1e-224 781.6 654 62.7
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.2e-223 780.0 664 61.4
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.2e-218 763.5 657 60.7
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 2.9e-217 758.8 663 60.0
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 1.1e-216 756.9 661 60.2
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 1.9e-216 756.1 624 62.7
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.3e-214 750.0 652 60.0
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.1e-213 746.9 619 61.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 4.5e-210 734.9 658 60.2
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 8.4e-209 730.7 653 57.6
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 4.2e-208 728.4 645 58.9
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 1.3e-206 723.4 660 57.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 1.8e-206 723.0 646 57.4
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.3e-205 718.4 659 58.0
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 5.6e-205 718.0 661 56.4
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.3e-204 716.8 644 57.5
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 4.8e-204 714.9 659 56.1
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.1e-203 713.8 653 56.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.5e-202 709.9 662 56.9
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 4.5e-202 708.4 656 56.9
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 5.8e-202 708.0 644 56.8
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 5.8e-202 708.0 655 56.0
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 7.1e-200 701.0 644 57.0
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 6.0e-199 698.0 664 56.3
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 7.9e-199 697.6 656 56.2
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.0e-198 697.2 660 56.1
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 3.0e-198 695.7 645 56.3
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 3.9e-198 695.3 715 54.7
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 5.1e-198 694.9 645 56.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 6.7e-198 694.5 659 57.1
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 8.7e-198 694.1 660 55.9
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 1.5e-197 693.3 653 55.3
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 5.6e-197 691.4 664 57.4
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 9.6e-197 690.6 646 55.6
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 1.3e-196 690.3 653 57.0
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 3.7e-196 688.7 654 55.5
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 4.8e-196 688.3 661 55.5
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.2e-196 688.0 689 53.4
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.5e-194 683.3 658 54.1
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 3.4e-194 682.2 665 54.9
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 3.4e-194 682.2 641 56.3
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.3e-193 680.2 667 55.0
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.2e-193 679.5 652 55.5
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.9e-193 679.1 744 49.5
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 4.9e-193 678.3 666 54.2
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 4.9e-193 678.3 661 53.4
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.4e-192 676.8 657 56.2
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 1.4e-192 676.8 658 55.9
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.1e-189 667.2 658 53.0
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 6.9e-187 657.9 613 56.3
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 2.0e-186 656.4 699 52.2
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 2.9e-185 652.5 657 53.7
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.4e-184 650.2 646 53.6
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 1.3e-182 643.7 642 54.8
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 3.0e-182 642.5 658 52.1
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 2.5e-181 639.4 689 50.1
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 2.8e-180 636.0 651 51.2
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.1e-179 634.0 649 51.2
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.7e-177 626.7 669 51.0
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 4.2e-176 622.1 671 50.7
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 6.1e-175 618.2 666 50.5
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 7.9e-175 617.8 676 49.4
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.8e-174 616.7 666 50.3
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 2.3e-174 616.3 665 50.4
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 3.0e-174 615.9 666 50.3
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 3.9e-174 615.5 669 50.1
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 2.6e-173 612.8 668 50.3
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.7e-173 611.7 668 50.3
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 6.3e-172 608.2 674 49.9
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.6e-167 593.6 517 59.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 3.9e-166 589.0 668 51.9
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 8.8e-166 587.8 653 50.4
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 3.5e-162 575.9 502 60.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.7e-161 573.5 651 48.8
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 4.0e-158 562.4 565 52.6
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 4.8e-156 555.4 646 48.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.4e-155 553.1 654 48.8
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 9.4e-152 541.2 506 56.7
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 2.5e-144 516.5 642 45.5
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.2e-142 508.8 463 58.5
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 8.3e-140 501.5 489 55.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 3.4e-133 479.6 658 44.1
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 2.4e-131 473.4 576 46.5
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.3e-129 467.6 510 52.4
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.3e-129 467.6 659 41.7
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 3.9e-89 333.2 647 33.2
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 5.1e-89 332.8 398 47.7
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 4.5e-85 319.7 651 32.7
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 3.7e-63 246.9 398 39.7
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 3.0e-57 227.3 159 68.6
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.2e-51 207.2 230 46.5
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 5.5e-51 206.5 493 32.9
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 9.7e-48 195.7 173 54.3
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.1e-46 192.2 458 31.7
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.3e-44 185.3 143 65.7
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.2e-40 172.2 573 27.7
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.7e-40 169.9 229 41.5
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 8.8e-33 146.0 94 70.2
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 2.3e-28 131.3 157 48.4
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 4.0e-25 120.6 107 57.0
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.6e-16 91.3 352 25.9
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 4.4e-16 90.5 83 56.6
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 8.3e-15 86.3 79 57.0
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.4e-14 85.5 74 60.8
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 2.4e-14 84.7 70 61.4
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 3.5e-13 80.9 82 52.4


User provided reference genes

Program Settings