Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 0.0e+00 1145.2 595 100.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.2e-311 1072.4 596 93.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.6e-303 1044.3 596 89.9
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.8e-303 1043.9 596 90.1
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.4e-301 1037.7 596 89.4
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.9e-300 1033.9 596 89.3
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.8e-295 1017.3 596 87.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 8.1e-295 1016.5 596 87.9
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 7.9e-274 946.8 597 83.1
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 8.8e-273 943.3 597 82.1
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.1e-272 943.0 597 81.1
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 4.3e-272 941.0 597 82.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.7e-272 939.9 596 81.4
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.3e-271 939.5 588 82.7
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.4e-270 936.0 591 82.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.5e-269 931.0 596 82.4
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.1e-267 926.4 587 80.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.2e-267 924.9 597 81.1
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 5.5e-267 924.1 598 81.9
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 7.2e-267 923.7 596 80.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.2e-266 922.9 587 80.9
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.1e-266 922.2 569 83.3
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.7e-266 921.8 597 80.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.7e-266 921.8 587 80.2
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.8e-265 919.1 590 79.3
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.1e-265 917.5 600 80.0
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 5.1e-265 917.5 598 80.8
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 5.7e-264 914.1 596 80.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 7.4e-264 913.7 591 81.0
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.7e-264 913.3 591 80.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.2e-263 912.1 589 79.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.8e-263 911.8 591 80.5
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.3e-263 910.6 591 80.9
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.1e-262 909.8 590 80.8
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.4e-262 909.4 594 79.6
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 5.3e-262 907.5 588 80.6
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 5.3e-262 907.5 633 76.1
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 5.3e-262 907.5 587 78.9
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 3.5e-261 904.8 589 79.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.5e-261 904.8 590 79.7
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 5.9e-261 904.0 586 79.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.7e-261 903.7 594 79.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 7.7e-261 903.7 590 79.5
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 7.7e-261 903.7 589 79.8
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.7e-260 902.5 589 80.5
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.2e-260 902.1 596 79.4
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 3.2e-259 898.3 588 79.9
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 7.2e-259 897.1 588 79.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.6e-258 896.0 702 68.9
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 3.6e-258 894.8 596 78.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 3.0e-257 891.7 596 78.5
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 5.2e-257 891.0 597 77.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 8.8e-257 890.2 589 78.8
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.1e-256 889.8 562 81.7
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 9.7e-256 886.7 597 77.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.2e-255 885.6 590 77.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.6e-253 879.4 593 77.2
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 3.5e-253 878.2 590 77.1
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 3.5e-253 878.2 597 75.9
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.0e-252 876.7 593 76.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.3e-252 876.3 597 75.9
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.7e-252 875.9 590 76.8
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.5e-251 872.8 590 76.1
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.5e-251 870.9 590 76.6
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 9.4e-251 870.2 590 76.3
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.7e-250 868.6 597 76.7
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.6e-250 868.2 593 76.2
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.4e-249 866.3 699 67.8
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.2e-249 864.4 591 76.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 5.2e-249 864.4 597 75.7
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 5.2e-249 864.4 508 86.2
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.8e-249 863.6 595 75.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 7.5e-248 860.5 576 77.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-247 859.8 594 75.8
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 4.8e-247 857.8 595 75.6
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 8.3e-247 857.1 595 75.5
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.1e-246 856.7 589 75.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.4e-246 855.5 589 76.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.1e-246 855.1 586 76.5
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 7.0e-246 854.0 599 74.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.0e-245 852.4 594 74.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 2.2e-244 849.0 596 74.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.2e-244 849.0 618 72.7
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.8e-244 848.2 590 75.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.5e-244 847.0 594 76.1
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.9e-243 845.9 567 77.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 5.5e-243 844.3 590 75.1
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 9.4e-243 843.6 576 76.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.1e-242 842.4 566 77.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.7e-242 842.0 592 74.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.8e-241 839.3 591 75.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.8e-241 839.3 575 76.0
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.0e-240 835.9 598 74.1
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 9.8e-240 833.6 597 73.2
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 9.8e-240 833.6 597 73.7
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.7e-239 832.8 597 74.9
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.7e-239 832.8 597 72.7
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 3.7e-239 831.6 598 73.7
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.8e-238 829.3 564 76.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.4e-238 828.9 598 72.9
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.0e-237 825.9 589 73.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 5.9e-237 824.3 592 72.8
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 2.9e-236 822.0 588 73.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.6e-234 816.2 597 70.7
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.8e-234 815.5 597 71.0
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.8e-234 815.5 594 73.7
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 3.0e-233 812.0 592 73.1
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.4e-232 808.5 592 73.1
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 7.5e-232 807.4 590 73.6
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.4e-230 802.4 511 80.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 9.2e-230 800.4 592 72.6
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.6e-229 799.7 598 71.7
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.7e-215 753.1 568 69.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 4.9e-215 751.5 599 67.4
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 9.2e-214 747.3 562 70.5
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.5e-213 745.3 522 72.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.7e-212 743.0 597 68.0
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.3e-211 738.8 598 67.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 4.6e-205 718.4 591 65.1
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.9e-199 699.1 522 69.7
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.1e-187 660.6 501 69.9
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 7.3e-187 657.9 433 79.2
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.7e-181 639.4 448 74.6
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 5.8e-176 621.7 507 68.2
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.2e-175 619.8 478 67.8
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.8e-164 583.6 380 80.8
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.5e-163 580.5 536 60.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.7e-154 549.3 587 57.9
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 2.6e-152 543.1 372 74.7
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 3.0e-140 503.1 526 52.1
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.8e-138 496.5 317 79.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.1e-137 493.0 400 67.8
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.1e-121 441.4 252 89.7
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 6.6e-119 432.2 309 73.1
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 8.6e-111 405.2 513 47.0
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.2e-96 358.2 564 40.4
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 6.0e-96 355.9 232 77.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.4e-90 335.9 228 77.6
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.6e-80 304.7 223 69.1
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.7e-74 284.6 210 69.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.1e-64 251.1 257 51.4
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 8.4e-58 229.2 349 40.7
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.1e-48 198.0 114 85.1
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 6.1e-48 196.4 266 43.6
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.2e-40 172.2 128 68.8
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.7e-32 144.4 137 59.9
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.9e-26 124.4 105 59.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 6.5e-26 123.2 186 45.2
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.6e-24 118.6 216 42.1
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.8e-23 115.2 103 58.3
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 6.5e-18 96.7 52 92.3
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 6.5e-18 96.7 52 92.3
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.5e-17 95.5 50 88.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.7e-16 91.3 81 60.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.4e-14 84.0 52 80.8
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.4e-12 79.0 60 66.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 4.2e-09 67.4 57 54.4
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 5.5e-09 67.0 62 54.8
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 5.5e-09 67.0 62 54.8
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 96.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 96.7
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.6e-08 64.3 62 54.8
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.0e-07 62.8 57 57.9
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 8.8e-07 59.7 115 36.5
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 5.7e-06 57.0 51 45.1


User provided reference genes

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