Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.4e-135 487.6 612 100.0
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.2e-88 331.6 612 85.8
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.2e-83 315.1 614 83.7
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.3e-82 310.8 614 83.7
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.5e-81 307.4 614 83.2
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 1.5e-57 228.4 611 79.5
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.5e-49 201.1 624 74.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 7.4e-49 199.5 600 76.5
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 5.3e-47 193.4 624 72.4
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.4e-39 167.9 577 76.3
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 9.0e-39 166.0 229 69.4
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.5e-38 165.2 629 73.3
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.0e-37 162.5 234 67.1
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.7e-37 161.8 230 72.2
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 1.4e-36 158.7 624 72.4
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 9.3e-36 156.0 624 72.3
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 3.0e-34 151.0 212 71.2
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 3.9e-34 150.6 596 72.1
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 2.8e-32 144.4 630 40.3
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 3.7e-32 144.1 614 71.8
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.8e-32 143.7 231 68.0
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 6.3e-32 143.3 235 65.5
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 6.3e-32 143.3 603 71.0
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 8.2e-32 142.9 230 64.8
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.4e-31 142.1 617 70.3
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.5e-30 138.7 230 71.7
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-30 137.9 233 63.5
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 5.9e-30 136.7 230 63.9
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.0e-29 136.0 196 72.4
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-29 135.2 211 68.7
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.7e-29 135.2 203 67.0
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 2.9e-29 134.4 230 61.7
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 5.0e-29 133.7 229 62.0
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 5.0e-29 133.7 230 64.3
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 6.5e-29 133.3 623 66.3
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 8.5e-29 132.9 577 72.6
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 8.5e-29 132.9 233 63.9
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 8.5e-29 132.9 229 58.1
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.1e-28 132.5 230 60.9
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.4e-28 132.1 230 63.5
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.9e-28 131.7 602 66.4
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 4.2e-28 130.6 228 64.9
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 7.2e-28 129.8 577 72.4
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 9.4e-28 129.4 209 68.9
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 1.2e-27 129.0 188 76.6
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.6e-27 128.6 230 62.6
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 3.6e-27 127.5 235 60.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 4.6e-27 127.1 223 64.6
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 4.6e-27 127.1 228 63.2
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 6.1e-27 126.7 222 64.9
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 6.1e-27 126.7 204 66.2
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.4e-26 125.6 209 73.2
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.4e-26 125.6 550 77.3
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.8e-26 125.2 193 75.6
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.8e-26 125.2 193 75.6
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.8e-26 125.2 227 64.8
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.8e-26 125.2 222 68.0
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.0e-26 124.4 228 64.5
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 5.1e-26 123.6 207 69.1
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 5.1e-26 123.6 228 64.0
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 6.7e-26 123.2 234 63.7
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 8.8e-26 122.9 201 68.2
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 8.8e-26 122.9 207 71.0
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.1e-25 122.5 208 66.3
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.5e-25 122.1 231 62.3
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.5e-25 122.1 231 62.8
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 2.0e-25 121.7 188 73.4
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.0e-25 121.7 610 64.9
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 2.0e-25 121.7 582 70.8
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 2.5e-25 121.3 231 65.4
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 7.4e-25 119.8 228 62.7
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 9.7e-25 119.4 617 67.9
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 9.7e-25 119.4 214 63.1
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.8e-24 117.9 230 60.4
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.8e-24 117.9 232 62.9
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 2.8e-24 117.9 228 61.8
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 4.8e-24 117.1 190 68.9
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 8.2e-24 116.3 190 68.9
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 1.4e-23 115.5 229 61.6
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 1.8e-23 115.2 78 69.2
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 2.4e-23 114.8 185 45.4
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 4.1e-23 114.0 203 32.5
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 4.1e-23 114.0 98 56.1
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 5.3e-23 113.6 147 46.3
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 5.3e-23 113.6 226 60.2
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 6.9e-23 113.2 190 66.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 9.1e-23 112.8 192 60.9
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.2e-22 112.5 190 70.5
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.2e-22 112.5 98 59.2
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.5e-22 112.1 79 64.6
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 1.5e-22 112.1 241 65.1
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.5e-22 112.1 98 57.1
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 2.0e-22 111.7 190 67.4
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.6e-22 111.3 190 67.4
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.6e-22 111.3 190 67.4
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 2.6e-22 111.3 193 76.2
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 3.4e-22 110.9 199 69.8
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 3.4e-22 110.9 190 67.4
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 7.7e-22 109.8 224 57.1
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.0e-21 109.4 207 67.6
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 1.3e-21 109.0 190 66.8
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 1.3e-21 109.0 190 66.8
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.3e-21 109.0 235 63.8
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.9e-21 107.8 231 39.4
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.8e-21 107.5 233 63.9
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 3.8e-21 107.5 203 57.6
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.8e-21 107.5 224 57.1
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 8.5e-21 106.3 207 66.2
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.4e-20 105.5 165 70.9
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.2e-20 104.4 203 58.6
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 3.2e-20 104.4 224 64.7
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.5e-20 103.6 219 30.1
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.2e-19 102.4 223 56.1
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 1.6e-19 102.1 212 57.1
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 1.6e-19 102.1 223 56.1
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 2.7e-19 101.3 100 48.0
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 2.7e-19 101.3 171 76.0
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 2.7e-19 101.3 193 60.6
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 2.7e-19 101.3 193 60.6
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.7e-19 101.3 166 75.9
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 2.7e-19 101.3 144 43.1
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.6e-19 100.9 231 56.3
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 3.6e-19 100.9 192 58.3
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 3.6e-19 100.9 229 65.5
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 3.6e-19 100.9 208 61.1
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 4.7e-19 100.5 192 37.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 6.1e-19 100.1 193 31.1
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 1.0e-18 99.4 209 59.8
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.0e-18 99.4 230 41.7
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 2.3e-18 98.2 186 66.1
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.0e-18 97.8 98 49.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.0e-18 97.8 192 30.2
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 3.0e-18 97.8 192 57.3
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.9e-18 97.4 203 57.1
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 5.1e-18 97.1 88 56.8
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 6.7e-18 96.7 192 30.7
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 8.8e-18 96.3 193 37.3
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 8.8e-18 96.3 191 63.4
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 8.8e-18 96.3 204 60.8
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 1.1e-17 95.9 231 39.8
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.5e-17 95.5 210 29.5
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 3.3e-17 94.4 171 70.8
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.3e-17 94.4 191 62.8
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.3e-17 94.4 191 62.8
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 5.7e-17 93.6 161 36.0
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 7.4e-17 93.2 188 71.8
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 9.7e-17 92.8 205 65.9
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-16 92.4 137 40.1
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.7e-16 90.9 188 42.0
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 3.7e-16 90.9 167 73.1
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 6.3e-16 90.1 102 40.2
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 8.2e-16 89.7 208 62.5
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 8.2e-16 89.7 208 62.5
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 1.4e-15 89.0 185 60.0
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.8e-15 88.6 185 47.6
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 3.1e-15 87.8 179 64.8
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 9.1e-15 86.3 185 63.8
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 9.1e-15 86.3 185 48.1
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 3.5e-14 84.3 219 52.5
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 4.5e-14 84.0 220 55.0
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 4.5e-14 84.0 219 53.0
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 4.5e-14 84.0 219 52.5
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 5.9e-14 83.6 57 63.2
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.0e-13 82.8 167 68.9
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.7e-13 82.0 190 27.9
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.9e-13 81.3 143 37.8
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 2.9e-13 81.3 63 58.7
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.0e-13 80.5 57 61.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.1e-12 79.3 173 28.3
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.9e-12 78.6 107 43.0
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 7.2e-12 76.6 72 44.4
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 9.4e-12 76.3 60 60.0
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 2.7e-11 74.7 157 30.6
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 3.6e-11 74.3 145 40.0
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 6.1e-11 73.6 48 68.8
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 6.1e-11 73.6 45 68.9
Psat7g013440 Pisum sativum HOM05D003689 ORTHO05D003950 3.0e-10 71.2 74 45.9
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.1e-09 69.3 107 40.2
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.5e-09 68.9 43 62.8
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 5.7e-09 67.0 70 44.3
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 5.7e-09 67.0 76 43.4
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 3.7e-08 64.3 112 33.0
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 1.6e-06 58.9 44 54.5
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 2.0e-06 58.5 160 28.1
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 3.5e-06 57.8 60 43.3


User provided reference genes

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