Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 3.7e-39 164.5 86 100.0
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 2.2e-36 155.2 86 86.0
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 8.5e-36 153.3 86 93.0
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.9e-35 152.1 86 84.9
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.9e-35 152.1 86 84.9
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.2e-35 151.4 86 84.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.2e-35 151.4 86 84.9
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.2e-35 151.4 86 84.9
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 7.2e-35 150.2 84 85.7
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.4e-33 146.0 86 83.7
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 81.4
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 79.1
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 76.7
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 8.2e-31 136.7 85 77.6
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.0e-29 132.1 85 75.3
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 84 81.0
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.7e-28 129.0 80 76.2
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.2e-28 128.6 85 72.9
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.8e-28 127.9 86 70.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 5.0e-28 127.5 86 76.7
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 6.5e-28 127.1 83 72.3
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 6.5e-28 127.1 85 71.8
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 8.5e-28 126.7 80 73.8
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 8.5e-28 126.7 83 72.3
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.1e-27 126.3 85 78.8
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.1e-27 126.3 86 68.6
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.5e-27 125.9 84 70.2
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.5e-27 125.9 83 79.5
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.5e-27 125.9 83 79.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.9e-27 125.6 85 70.6
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 1.9e-27 125.6 86 76.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 68.6
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 4.2e-27 124.4 86 75.6
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 4.2e-27 124.4 85 68.2
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 5.5e-27 124.0 83 78.3
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 5.5e-27 124.0 85 69.4
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 5.5e-27 124.0 85 69.4
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 7.2e-27 123.6 85 70.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 9.4e-27 123.2 86 67.4
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 9.4e-27 123.2 85 69.4
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 9.4e-27 123.2 85 69.4
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 9.4e-27 123.2 86 66.3
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.2e-26 122.9 86 66.3
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 2.1e-26 122.1 95 63.2
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.1e-26 122.1 85 75.3
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 2.1e-26 122.1 87 69.0
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.7e-26 121.7 85 75.3
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.7e-26 121.7 86 65.1
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 2.7e-26 121.7 85 75.3
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 3.6e-26 121.3 85 75.3
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 4.7e-26 120.9 84 71.4
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 6.1e-26 120.6 80 70.0
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 6.1e-26 120.6 86 66.3
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 67.1
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 8.0e-26 120.2 95 62.1
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 8.0e-26 120.2 83 68.7
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 8.0e-26 120.2 85 75.3
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 8.0e-26 120.2 86 66.3
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 62.8
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.0e-25 119.8 83 74.7
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.0e-25 119.8 83 69.9
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.4e-25 119.4 85 72.9
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.4e-25 119.4 84 69.0
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.8e-25 119.0 87 65.5
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.8e-25 119.0 80 70.0
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-25 119.0 80 70.0
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.3e-25 118.6 80 68.8
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.3e-25 118.6 83 68.7
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 95 63.2
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 3.0e-25 118.2 83 65.1
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 4.0e-25 117.9 92 64.1
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 4.0e-25 117.9 91 72.5
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 5.2e-25 117.5 85 75.3
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.2e-25 117.5 80 68.8
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.2e-25 117.5 80 68.8
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.2e-25 117.5 80 67.5
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.2e-25 117.5 81 74.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 6.7e-25 117.1 86 61.6
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 6.7e-25 117.1 86 62.8
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 8.8e-25 116.7 83 63.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 8.8e-25 116.7 74 70.3
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.2e-24 116.3 86 70.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.5e-24 115.9 86 70.9
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.0e-24 115.5 83 67.5
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.6e-24 115.2 81 66.7
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 64.0
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 5.7e-24 114.0 86 70.9
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 5.7e-24 114.0 90 62.2
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 5.7e-24 114.0 90 62.2
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 7.5e-24 113.6 80 65.0
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.3e-23 112.8 86 60.5
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 3.7e-23 111.3 112 53.6
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.8e-23 110.9 85 57.6
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.3e-23 110.5 68 72.1
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 6.3e-23 110.5 83 59.0
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 8.3e-23 110.2 86 69.8
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.1e-22 109.8 77 63.6
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-22 109.4 71 74.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-22 109.4 71 74.6
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.4e-22 109.4 86 58.1
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.8e-22 109.0 78 74.4
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.1e-22 107.8 87 58.6
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 4.1e-22 107.8 73 74.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 7.0e-22 107.1 93 57.0
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 9.1e-22 106.7 78 60.3
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.6e-21 105.9 74 67.6
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.7e-21 105.1 86 58.1
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.5e-21 104.8 70 70.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.5e-21 104.4 80 60.0
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 7.7e-21 103.6 68 72.1
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.0e-20 103.2 77 58.4
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.0e-20 103.2 84 59.5
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.0e-20 103.2 68 72.1
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.0e-20 103.2 71 69.0
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.3e-20 102.8 77 61.0
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.7e-20 102.4 90 53.3
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.7e-20 102.4 69 79.7
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.2e-20 102.1 80 57.5
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 3.8e-20 101.3 69 69.6
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.5e-20 100.1 80 57.5
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.1e-19 99.8 70 60.0
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.1e-19 99.8 80 56.2
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.5e-19 99.4 80 56.2
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-19 99.4 80 56.2
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.9e-19 99.0 89 58.4
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.5e-19 98.6 99 59.6
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 7.2e-19 97.1 69 63.8
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 9.4e-19 96.7 88 63.6
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.7e-18 95.1 71 64.8
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 4.7e-18 94.4 64 65.6
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 8.0e-18 93.6 59 69.5
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 8.0e-18 93.6 58 72.4
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.8e-17 92.4 93 51.6
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.4e-16 88.2 75 49.3
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 7.5e-16 87.0 69 58.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 9.8e-16 86.7 71 52.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.2e-15 85.5 83 53.0
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 3.7e-15 84.7 57 68.4
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 8.3e-15 83.6 73 56.2
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.4e-14 82.8 60 63.3
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.4e-14 82.8 52 69.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.4e-14 82.8 55 67.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 5.4e-14 80.9 86 52.3
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 2.0e-13 79.0 54 66.7
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 3.5e-13 78.2 96 45.8
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.5e-13 78.2 101 45.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 3.5e-13 78.2 47 74.5
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 7.7e-13 77.0 53 66.0
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.3e-12 75.5 52 69.2
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-11 72.8 68 54.4
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.6e-10 68.2 46 60.9
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 4.7e-10 67.8 65 44.6
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.8e-09 65.9 59 59.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 2.0e-08 62.4 73 47.9
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.3e-07 59.7 59 47.5


User provided reference genes

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