Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 1.1e-138 496.9 245 100.0
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.1e-87 327.4 193 82.9
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.3e-79 299.3 192 78.1
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 4.3e-79 298.9 192 78.1
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 4.3e-79 298.9 192 78.1
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 7.1e-74 281.6 176 80.1
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 4.2e-66 255.8 193 67.4
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 4.6e-65 252.3 192 62.5
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 7.9e-65 251.5 192 62.5
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 1.8e-64 250.4 195 64.6
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 3.9e-64 249.2 193 65.3
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 8.8e-64 248.1 194 64.9
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 9.7e-63 244.6 194 62.4
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.7e-62 243.8 191 61.3
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 8.2e-62 241.5 191 61.3
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.1e-61 241.1 191 61.3
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.1e-61 241.1 194 63.4
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.4e-61 240.7 193 61.1
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.4e-61 240.0 194 61.3
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 5.3e-61 238.8 193 62.2
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.5e-60 237.3 191 60.2
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 3.4e-60 236.1 193 60.1
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.9e-60 235.3 191 60.7
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.0e-59 234.6 191 59.7
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 1.7e-59 233.8 194 60.3
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 5.0e-59 232.3 191 59.7
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 8.5e-59 231.5 193 59.1
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 8.5e-59 231.5 194 58.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.5e-58 229.9 192 58.3
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 2.5e-58 229.9 193 59.6
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 3.2e-58 229.6 192 60.4
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.2e-58 229.6 192 59.4
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.2e-58 229.2 192 58.9
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 4.2e-58 229.2 192 61.5
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.6e-57 227.3 195 62.6
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.6e-57 227.3 192 58.3
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.6e-57 227.3 190 59.5
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 2.1e-57 226.9 170 65.9
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.7e-57 225.7 192 57.8
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 4.7e-57 225.7 194 60.3
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 6.1e-57 225.3 193 59.6
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.0e-56 224.6 192 57.8
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 5.1e-56 222.2 193 61.1
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 5.1e-56 222.2 194 58.8
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 6.7e-56 221.9 205 55.1
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 6.7e-56 221.9 195 59.0
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.1e-55 221.1 192 58.9
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.1e-55 221.1 192 58.9
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 2.6e-55 219.9 194 57.7
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 2.6e-55 219.9 194 57.7
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 3.3e-55 219.5 192 57.8
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 3.3e-55 219.5 193 56.5
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 5.7e-55 218.8 187 60.4
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 5.7e-55 218.8 192 58.9
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.3e-54 217.6 191 58.1
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.3e-54 217.6 191 58.1
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.2e-54 216.9 196 58.7
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 8.2e-54 214.9 192 56.2
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 8.2e-54 214.9 188 58.0
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.4e-53 214.2 191 57.6
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.8e-53 213.8 194 56.7
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.4e-53 213.4 180 58.3
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 5.3e-53 212.2 193 60.1
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 7.0e-53 211.8 192 56.2
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 9.1e-53 211.5 187 56.7
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 9.1e-53 211.5 195 56.4
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 9.1e-53 211.5 193 56.5
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.5e-52 210.7 194 56.2
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 2.0e-52 210.3 191 56.5
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 5.9e-52 208.8 188 56.9
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 5.9e-52 208.8 188 56.9
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 5.9e-52 208.8 194 54.1
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 5.9e-52 208.8 192 53.6
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 7.7e-52 208.4 196 53.6
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.7e-52 208.4 195 52.8
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.3e-51 207.6 188 56.4
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.3e-51 207.6 193 54.4
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.7e-51 207.2 191 55.5
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.9e-51 206.5 195 52.3
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 5.0e-51 205.7 193 56.0
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 4.2e-50 202.6 203 53.2
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.5e-50 202.2 175 58.9
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 9.4e-50 201.4 212 53.3
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.6e-49 200.7 196 53.1
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.7e-49 199.9 193 51.8
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.0e-48 198.0 195 51.8
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 5.2e-48 195.7 192 54.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 5.2e-48 195.7 182 51.6
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 5.2e-48 195.7 193 51.8
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 8.8e-48 194.9 174 59.2
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 8.8e-48 194.9 192 54.2
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 2.6e-47 193.4 174 56.3
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.7e-47 192.2 192 53.6
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 8.2e-46 188.3 193 51.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 8.2e-46 188.3 193 52.3
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 8.2e-46 188.3 192 51.0
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.1e-45 186.4 173 54.9
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 2.6e-44 183.3 193 48.7
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 4.5e-44 182.6 191 49.2
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 4.5e-44 182.6 175 53.1
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.9e-44 182.2 190 52.6
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 3.8e-43 179.5 199 51.3
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.1e-42 177.9 194 52.1
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.1e-42 177.9 170 53.5
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.6e-41 174.1 177 50.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 1.6e-41 174.1 168 56.0
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 6.1e-41 172.2 168 51.2
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.4e-39 166.0 170 50.0
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.4e-39 166.0 170 50.0
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.8e-38 163.3 170 50.0
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.8e-38 163.3 170 50.0
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 9.1e-37 158.3 162 50.6
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.0e-36 157.1 222 42.3
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 3.5e-36 156.4 131 61.8
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 4.5e-36 156.0 198 43.4
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 7.7e-36 155.2 197 43.7
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 9.4e-34 148.3 169 49.1
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.2e-33 147.9 162 51.9
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 8.0e-33 145.2 252 37.3
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 3.7e-30 136.3 120 60.0
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.3e-30 135.2 88 65.9
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 6.6e-27 125.6 200 35.0
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 6.8e-24 115.5 157 42.7
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.3e-22 111.3 217 35.0
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.0e-20 104.0 58 77.6
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 4.5e-20 102.8 155 40.6
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.3e-19 100.5 121 51.2
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 3.9e-19 99.8 135 42.2
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 5.6e-18 95.9 57 71.9
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.6e-17 94.4 346 24.6
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.6e-17 93.2 84 46.4
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.3e-16 90.5 144 39.6
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.6e-15 87.0 234 27.8
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 4.4e-15 86.3 135 40.0
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.3e-14 84.7 50 70.0
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.9e-14 83.6 170 31.2
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 6.4e-14 82.4 48 79.2
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.0e-11 72.8 108 41.7
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.5e-10 70.5 60 56.7
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 8.0e-09 65.5 40 62.5
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 8.0e-09 65.5 40 62.5
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 4.4e-07 59.7 32 78.1
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.8e-07 58.5 29 75.9
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.3e-06 58.2 29 79.3
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 1.7e-06 57.8 31 74.2


User provided reference genes

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