Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 3.3e-63 245.4 173 100.0
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 1.2e-44 183.7 174 74.7
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.2e-44 183.7 173 73.4
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.3e-38 161.4 171 57.3
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.2e-38 161.0 171 56.7
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.8e-37 159.8 171 56.7
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.2e-36 157.1 199 69.8
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.5e-23 113.6 174 45.4
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.1e-21 105.9 105 56.2
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 7.0e-21 104.8 174 44.3
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 9.1e-21 104.4 109 52.3
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.2e-20 104.0 129 49.6
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.0e-20 103.2 172 50.6
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.7e-19 100.1 177 41.8
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.0e-19 98.6 164 40.2
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.2e-18 95.5 109 48.6
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 4.0e-16 89.0 130 48.5
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.7e-14 83.6 105 47.6
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.7e-14 83.6 105 47.6
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.8e-14 82.8 105 51.4
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.8e-14 82.8 105 51.4
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 3.7e-14 82.4 170 41.2
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 6.3e-14 81.6 107 46.7
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 6.3e-14 81.6 119 43.7
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.1e-13 80.9 108 46.3
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.4e-13 79.7 129 44.2
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 3.1e-13 79.3 107 47.7
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 3.1e-13 79.3 149 38.3
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 4.1e-13 79.0 103 46.6
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 5.4e-13 78.6 95 46.3
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.4e-13 78.6 168 36.9
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 7.0e-13 78.2 98 43.9
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 7.0e-13 78.2 164 40.2
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 1.2e-12 77.4 100 44.0
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.2e-12 77.4 106 39.6
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.2e-12 77.4 149 37.6
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 1.6e-12 77.0 98 42.9
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 2.7e-12 76.3 107 40.2
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 2.7e-12 76.3 107 40.2
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.5e-12 75.9 188 44.7
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 4.5e-12 75.5 119 43.7
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.0e-11 74.3 106 47.2
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.3e-11 73.9 183 34.4
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.3e-11 73.9 97 44.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 3.8e-11 72.4 114 41.2
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.0e-11 72.0 87 47.1
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 5.0e-11 72.0 113 40.7
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 5.0e-11 72.0 101 43.6
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 6.5e-11 71.6 105 44.8
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 8.5e-11 71.2 117 41.9
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.1e-10 70.9 91 44.0
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 1.1e-10 70.9 89 40.4
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 1.1e-10 70.9 89 40.4
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 3.2e-10 69.3 187 44.9
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 4.2e-10 68.9 102 51.0
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.2e-10 68.9 97 49.5
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.2e-10 68.9 97 49.5
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 5.5e-10 68.6 98 42.9
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 7.2e-10 68.2 120 40.0
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 7.2e-10 68.2 106 41.5
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 9.4e-10 67.8 110 38.2
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 9.4e-10 67.8 123 39.0
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 9.4e-10 67.8 169 36.7
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.2e-09 67.4 106 43.4
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.2e-09 67.4 117 41.0
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.6e-09 67.0 79 44.3
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.6e-09 67.0 106 40.6
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 1.6e-09 67.0 104 43.3
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.1e-09 66.6 104 43.3
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 2.7e-09 66.2 101 40.6
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.7e-09 66.2 118 38.1
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.6e-09 65.9 106 39.6
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 4.7e-09 65.5 104 41.3
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 4.7e-09 65.5 102 43.1
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 6.1e-09 65.1 106 41.5
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.1e-09 65.1 60 60.0
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.0e-09 64.7 99 37.4
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.0e-09 64.7 182 34.1
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.0e-09 64.7 168 34.5
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 8.0e-09 64.7 105 41.9
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 8.0e-09 64.7 169 37.3
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.0e-09 64.7 85 42.4
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.0e-08 64.3 110 40.0
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.0e-08 64.3 161 34.2
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.4e-08 63.9 99 37.4
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 1.4e-08 63.9 163 33.7
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.8e-08 63.5 142 43.7
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 2.3e-08 63.2 83 45.8
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.3e-08 63.2 43 65.1
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 2.3e-08 63.2 105 41.9
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 3.0e-08 62.8 120 42.5
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.0e-08 62.8 165 34.5
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.0e-08 62.8 182 33.5
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 3.0e-08 62.8 169 33.7
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.0e-08 62.8 109 34.9
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 4.0e-08 62.4 115 38.3
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 4.0e-08 62.4 108 38.9
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 5.2e-08 62.0 159 32.1
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 5.2e-08 62.0 103 41.7
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 5.2e-08 62.0 125 36.0
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.2e-08 62.0 172 35.5
CDE02G0310 Ceratophyllum demersum HOM05D003969 ORTHO05D003125 6.8e-08 61.6 94 37.2
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.8e-08 61.6 182 33.5
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 6.8e-08 61.6 97 38.1
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 6.8e-08 61.6 108 37.0
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.2e-07 60.8 95 43.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.2e-07 60.8 164 32.3
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.2e-07 60.8 163 33.7
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.5e-07 60.5 43 62.8
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.5e-07 60.5 102 43.1
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.5e-07 60.5 85 42.4
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.5e-07 60.5 163 31.3
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 2.0e-07 60.1 105 38.1
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.0e-07 60.1 93 40.9
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 2.0e-07 60.1 99 40.4
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 2.6e-07 59.7 60 56.7
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 2.6e-07 59.7 106 36.8
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.6e-07 59.7 108 38.0
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 2.6e-07 59.7 162 33.3
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.4e-07 59.3 105 40.0
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.4e-07 58.9 115 37.4
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 5.7e-07 58.5 167 33.5
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 5.7e-07 58.5 55 60.0
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 5.7e-07 58.5 79 41.8
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 5.7e-07 58.5 45 60.0
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 7.5e-07 58.2 94 38.3
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 7.5e-07 58.2 111 36.0
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.8e-07 57.8 115 37.4
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 9.8e-07 57.8 125 36.8
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 9.8e-07 57.8 162 30.9
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 1.3e-06 57.4 102 36.3
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-06 57.4 89 38.2
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 1.3e-06 57.4 40 67.5
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 1.7e-06 57.0 47 55.3
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.7e-06 57.0 81 40.7
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 1.7e-06 57.0 56 55.4
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.7e-06 57.0 101 35.6
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 1.7e-06 57.0 49 57.1
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-06 56.6 101 38.6
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-06 56.6 115 35.7
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-06 56.6 101 38.6
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.2e-06 56.6 57 54.4
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 2.8e-06 56.2 47 59.6
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 2.8e-06 56.2 108 33.3
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 3.7e-06 55.8 49 67.3
arahy.Tifrunner.gnm1.ann1.H8K6JA Arachis hypogaea HOM05D013068 ORTHO05D003125 3.7e-06 55.8 49 67.3
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.7e-06 55.8 115 35.7
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 3.7e-06 55.8 104 38.5
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 4.9e-06 55.5 49 55.1
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.9e-06 55.5 103 35.9
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 4.9e-06 55.5 85 41.2
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.3e-06 55.1 100 37.0
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.3e-06 55.1 101 36.6
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 6.3e-06 55.1 46 56.5
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 8.3e-06 54.7 102 41.2
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 8.3e-06 54.7 106 45.3
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 8.3e-06 54.7 106 45.3
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 8.3e-06 54.7 106 45.3
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 8.3e-06 54.7 106 45.3
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.3e-06 54.7 89 37.1
Os06g0646100 Oryza sativa ssp. japonica HOM05D021431 ORTHO05D003125 8.3e-06 54.7 55 50.9


User provided reference genes

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