Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1628.2 810 100.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1446.0 808 88.5
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1430.6 808 87.1
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1428.3 808 86.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1427.2 808 86.5
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 0.0e+00 1276.5 833 77.8
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1184.5 811 72.5
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1181.0 818 71.4
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1168.3 813 71.6
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1167.9 819 70.9
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1164.8 814 70.3
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1164.8 811 71.5
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1152.1 873 66.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1152.1 813 69.6
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1139.8 813 69.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1137.9 813 68.6
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1120.9 813 67.7
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1116.3 813 68.0
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1112.8 813 66.8
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1107.0 813 67.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1105.1 788 70.1
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1102.4 812 66.6
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1098.6 816 67.2
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1092.0 812 66.5
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1082.0 812 66.0
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1077.4 815 65.8
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.5e-312 1073.9 815 65.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 5.5e-310 1067.4 812 65.9
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 7.1e-310 1067.0 819 65.3
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.6e-309 1065.8 811 64.7
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.1e-307 1059.7 812 64.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.1e-307 1059.7 813 65.2
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.3e-307 1058.1 813 64.1
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.2e-306 1053.5 810 65.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.2e-304 1049.7 810 65.2
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.6e-304 1048.5 811 65.2
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.8e-303 1044.6 822 64.0
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.5e-303 1043.5 812 65.1
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 8.5e-303 1043.5 812 64.4
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.1e-302 1043.1 813 64.6
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.9e-302 1042.3 817 63.5
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 5.5e-302 1040.8 807 64.4
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.6e-301 1038.1 822 63.7
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.8e-300 1035.8 822 63.6
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 6.7e-300 1033.9 818 63.1
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.1e-299 1033.1 823 63.7
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.1e-299 1033.1 821 63.5
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.5e-299 1031.9 850 61.3
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 7.4e-299 1030.4 810 63.7
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.3e-298 1029.6 809 64.5
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 3.1e-297 1025.0 819 63.5
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 4.1e-297 1024.6 819 63.4
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-296 1022.7 819 63.2
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.5e-296 1022.7 819 63.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.9e-295 1018.5 827 62.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.8e-295 1018.1 827 62.6
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 5.0e-295 1017.7 813 62.5
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 6.5e-295 1017.3 812 62.3
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.5e-294 1015.4 873 60.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 3.6e-293 1011.5 808 63.1
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.0e-292 1010.0 809 62.5
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 9.7e-291 1003.4 833 62.5
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 2.2e-290 1002.3 813 61.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 4.8e-290 1001.1 807 61.5
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.1e-289 1000.0 812 60.7
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.0e-288 995.7 808 61.6
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 7.7e-288 993.8 807 61.6
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.7e-287 992.6 809 61.6
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 8.5e-287 990.3 808 61.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.1e-286 989.9 814 60.6
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-286 988.8 813 61.6
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 5.5e-286 987.6 829 61.5
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 3.6e-285 984.9 814 61.3
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 3.9e-284 981.5 811 60.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 4.1e-281 971.5 813 60.0
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 7.7e-280 967.2 812 60.8
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 2.1e-277 959.1 807 60.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.6e-277 958.4 820 59.3
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 3.0e-276 955.3 809 59.7
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 3.4e-275 951.8 811 59.2
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 9.8e-275 950.3 812 60.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.3e-274 949.9 822 59.9
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.0e-272 942.6 813 60.3
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.5e-272 941.8 812 60.2
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.7e-269 932.2 817 59.0
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 7.7e-264 914.1 813 57.4
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.0e-256 889.4 813 56.0
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 4.7e-253 878.2 811 55.0
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 3.4e-251 872.1 812 55.9
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 8.3e-250 867.5 815 54.8
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 8.6e-247 857.4 583 71.7
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.6e-246 854.7 826 54.7
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.6e-245 852.0 626 65.0
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.4e-241 839.3 813 53.8
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.2e-237 827.0 747 58.0
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.1e-233 812.0 811 51.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 4.6e-232 808.5 814 51.5
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 5.4e-225 785.0 889 49.3
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 9.9e-219 764.2 574 65.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 5.6e-206 721.8 808 48.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.0e-195 686.8 821 46.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.2e-193 679.1 824 46.6
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 7.2e-193 678.3 823 45.9
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.1e-191 672.2 855 45.4
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.9e-185 653.7 460 69.3
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 5.1e-175 619.0 823 45.1
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 4.4e-158 562.8 818 42.4
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.7e-157 559.7 826 42.9
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.4e-156 557.0 845 39.6
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.0e-151 539.7 476 58.4
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.2e-150 538.1 681 44.3
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 4.3e-145 519.6 850 37.9
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.1e-144 517.3 593 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 7.0e-140 502.3 826 37.7
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 3.9e-138 496.5 824 40.2
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.4e-135 488.0 338 69.8
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.1e-124 451.8 852 35.3
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 5.8e-102 376.3 391 49.9
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.5e-94 350.1 757 31.2
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.1e-90 336.7 400 47.5
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 3.3e-65 254.2 278 52.2
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.7e-64 250.8 277 52.0
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 5.3e-63 246.9 277 51.6
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 5.3e-63 246.9 153 75.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.7e-61 241.9 747 28.8
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.0e-54 218.4 203 56.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 7.7e-54 216.5 197 58.9
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.9e-46 190.3 156 60.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 4.4e-41 174.1 775 23.6
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.5e-38 164.5 464 29.7
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.8e-35 154.8 133 54.9
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.8e-35 154.8 136 55.9
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 4.7e-35 154.1 104 71.2
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 7.8e-22 110.2 97 59.8
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.3e-18 98.6 63 76.2
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 3.7e-16 91.3 114 43.9
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 3.2e-15 88.2 114 43.0
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 9.2e-15 86.7 61 70.5
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.5e-14 84.7 65 60.0
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.1e-12 79.7 130 35.4
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.6e-09 68.6 100 39.0
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 4.9e-08 64.3 90 42.2
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.4e-07 62.8 97 38.1
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.9e-07 62.4 46 65.2
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 4.1e-07 61.2 94 40.4
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 9.2e-07 60.1 48 56.2
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 9.2e-07 60.1 39 76.9
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 9.2e-07 60.1 39 76.9


User provided reference genes

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