Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 4.4e-219 764.2 360 100.0
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 5.8e-179 630.9 355 84.8
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.2e-171 606.7 360 80.8
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.2e-170 602.4 360 80.8
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.4e-170 600.5 360 80.3
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 3.0e-167 592.0 328 84.5
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 4.9e-162 574.7 318 84.6
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 4.5e-155 551.6 327 78.9
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.4e-153 546.6 328 78.7
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-145 520.4 315 77.5
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 6.5e-122 441.4 355 63.9
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.6e-120 436.8 324 66.7
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.8e-119 433.3 355 62.5
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 3.0e-119 432.6 361 61.8
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 4.0e-119 432.2 363 61.7
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 9.8e-118 427.6 329 64.4
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 2.8e-117 426.0 281 73.0
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 4.1e-116 422.2 358 62.6
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 4.5e-115 418.7 220 86.8
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.9e-114 416.0 281 70.1
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 3.8e-114 415.6 305 67.5
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 5.0e-114 415.2 278 70.9
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 8.6e-114 414.5 247 76.5
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.9e-113 413.3 224 82.6
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 5.2e-111 405.2 337 64.1
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 8.9e-111 404.4 257 74.7
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 5.7e-110 401.7 370 59.2
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 7.5e-110 401.4 285 69.8
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 9.8e-110 401.0 358 60.1
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 1.3e-109 400.6 284 70.4
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.7e-109 399.1 336 63.1
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 4.9e-109 398.7 219 81.3
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 6.3e-109 398.3 282 68.4
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 1.1e-108 397.5 355 57.5
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.1e-108 397.5 257 75.1
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 4.1e-108 395.6 327 62.1
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.0e-108 394.8 356 58.4
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 9.2e-108 394.4 259 71.0
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.2e-107 394.0 259 70.7
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.7e-107 392.9 320 61.6
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.3e-106 390.6 352 58.2
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 2.3e-106 389.8 215 82.8
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.9e-106 389.4 321 62.0
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 3.9e-106 389.0 319 62.1
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 3.9e-106 389.0 319 62.1
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.1e-105 387.5 262 71.4
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 3.3e-105 386.0 367 57.5
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 4.3e-105 385.6 239 74.9
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 5.6e-105 385.2 256 72.3
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 7.3e-105 384.8 356 56.7
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 7.3e-105 384.8 272 68.8
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.2e-104 384.0 300 64.7
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.6e-104 383.6 367 56.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 2.1e-104 383.3 203 83.7
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.1e-104 383.3 203 83.7
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.1e-104 383.3 203 83.7
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.7e-104 382.1 203 83.7
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 4.7e-104 382.1 258 70.5
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 8.0e-104 381.3 250 74.8
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 8.0e-104 381.3 324 60.2
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.8e-103 380.2 273 67.4
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 4.0e-103 379.0 373 55.8
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 5.2e-103 378.6 374 56.1
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 5.2e-103 378.6 213 82.2
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 6.8e-103 378.3 360 58.3
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 6.8e-103 378.3 360 58.3
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.2e-102 377.5 254 71.3
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.2e-102 377.5 213 82.2
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 2.0e-102 376.7 220 75.5
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 2.0e-102 376.7 259 69.9
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 2.0e-102 376.7 212 81.6
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.6e-102 376.3 374 54.8
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 2.6e-102 376.3 220 78.2
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 3.4e-102 375.9 323 61.6
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.4e-102 375.9 262 69.8
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 4.4e-102 375.6 291 61.9
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 5.8e-102 375.2 373 54.7
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.3e-101 374.0 213 80.8
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.3e-101 374.0 203 81.3
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.7e-101 373.6 275 65.5
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.7e-101 373.6 213 80.3
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.7e-101 373.6 331 59.5
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.7e-101 373.6 213 79.3
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 2.2e-101 373.2 292 64.4
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 2.9e-101 372.9 323 61.0
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.9e-101 372.9 287 64.1
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.9e-101 372.9 213 80.3
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.7e-101 372.5 206 81.6
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 6.4e-101 371.7 213 80.3
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 8.3e-101 371.3 316 60.1
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.1e-100 370.9 287 64.5
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 1.4e-100 370.5 215 78.6
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.2e-99 367.5 215 77.7
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-99 367.5 233 73.0
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.2e-99 367.5 217 77.9
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.6e-99 367.1 245 66.9
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 3.5e-99 365.9 211 78.7
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 3.5e-99 365.9 246 69.9
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 4.6e-99 365.5 213 78.9
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-98 364.0 291 62.5
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.1e-97 360.9 294 62.2
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.5e-97 359.8 217 76.0
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 7.3e-97 358.2 210 78.6
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.2e-96 357.5 245 67.3
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 2.1e-96 356.7 271 64.9
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 1.1e-95 354.4 192 82.8
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 2.3e-95 353.2 213 76.1
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 8.9e-95 351.3 304 58.6
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.9e-92 343.6 286 59.1
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.2e-92 342.8 273 60.8
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 9.2e-92 341.3 208 74.5
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 1.6e-91 340.5 236 66.1
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.6e-91 339.0 208 72.6
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 5.1e-90 335.5 245 63.3
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 5.6e-89 332.0 220 66.8
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 5.6e-89 332.0 256 63.3
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.9e-85 319.7 211 66.4
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.3e-81 305.1 214 61.7
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 2.4e-79 300.1 193 74.6
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.9e-76 290.4 161 78.9
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.4e-76 290.0 160 76.9
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 3.9e-74 282.7 222 56.8
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 8.7e-74 281.6 160 77.5
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 1.6e-72 277.3 260 55.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 3.6e-72 276.2 197 61.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.8e-71 273.9 188 71.8
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.1e-71 273.1 165 78.8
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 8.4e-69 265.0 150 76.7
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 6.6e-66 255.4 142 80.3
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 5.8e-62 242.3 202 56.4
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.6e-57 225.7 128 75.8
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 2.2e-53 213.8 153 65.4
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 3.7e-48 196.4 160 58.8
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 2.4e-47 193.7 188 49.5
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.1e-31 141.7 113 54.9
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.8e-24 117.1 83 57.8
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 4.8e-24 116.3 120 53.3
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 4.5e-22 109.8 140 45.0
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 2.1e-19 100.9 137 45.3
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.2e-18 96.3 78 64.1
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 6.7e-18 95.9 87 58.6
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.3e-16 91.7 68 67.6
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 1.4e-15 88.2 59 72.9
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 3.0e-10 70.5 90 42.2
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 1.6e-06 58.2 43 60.5
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.0e-06 57.8 67 44.8


User provided reference genes

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