Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 9.8e-104 380.2 197 100.0
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.6e-80 302.4 199 81.4
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 6.4e-79 297.7 198 80.3
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-77 293.1 198 78.8
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.8e-77 290.8 198 77.8
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.5e-75 286.6 197 75.1
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.6e-60 234.6 197 69.0
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.5e-59 232.6 198 67.7
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.3e-59 231.1 198 68.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.1e-58 227.6 198 67.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.1e-57 225.7 144 77.1
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-57 225.3 198 66.7
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.3e-57 224.9 198 67.2
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.3e-57 224.9 198 66.7
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.0e-57 224.2 198 66.2
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-56 223.8 198 66.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-56 223.4 198 65.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.0e-53 211.5 198 64.1
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.4e-51 204.5 198 61.6
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 4.0e-49 198.7 200 55.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 3.8e-47 192.2 208 52.9
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.3e-46 187.6 197 58.9
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.6e-45 186.8 194 58.2
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 4.6e-45 185.3 201 55.7
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 5.7e-43 178.3 234 50.0
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 4.8e-42 175.3 199 53.3
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 8.2e-42 174.5 197 52.8
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.5e-40 170.2 202 52.0
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.0e-40 169.9 197 53.3
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.2e-39 166.4 192 52.1
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 6.5e-39 164.9 192 52.1
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.5e-39 164.9 197 51.8
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.5e-39 164.9 192 52.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 6.5e-39 164.9 197 51.3
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.2e-38 162.5 147 61.9
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.2e-38 162.5 147 61.9
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 9.3e-38 161.0 184 52.2
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.6e-37 160.2 192 50.5
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.0e-36 157.5 177 54.2
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.3e-36 157.1 192 50.5
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.8e-36 156.8 207 49.3
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 8.7e-36 154.5 203 47.3
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.5e-35 153.7 205 45.9
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.9e-35 153.3 205 45.9
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 3.3e-35 152.5 172 54.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 3.3e-35 152.5 198 49.0
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.3e-34 150.6 196 46.4
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.6e-34 150.2 205 46.3
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.7e-34 149.1 203 46.8
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 8.2e-34 147.9 193 46.6
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.1e-33 147.5 197 47.2
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.4e-33 147.1 194 43.8
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.8e-33 146.7 197 48.7
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 5.3e-33 145.2 205 46.8
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 3.4e-32 142.5 204 45.1
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 1.0e-31 141.0 200 46.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.0e-31 141.0 189 46.0
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.0e-31 141.0 197 45.7
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.3e-31 140.6 150 54.7
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 2.2e-31 139.8 204 44.1
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.9e-31 139.4 203 47.3
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 8.5e-31 137.9 220 43.2
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.5e-30 136.3 191 47.6
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 5.5e-30 135.2 177 46.3
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 7.2e-30 134.8 204 42.2
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.7e-29 132.9 204 41.7
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 1.4e-28 130.6 189 43.4
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.4e-28 130.6 197 43.7
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.8e-28 130.2 203 42.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.0e-28 129.4 201 43.3
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.1e-27 127.5 195 43.6
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.5e-27 127.1 210 43.3
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.5e-27 127.1 177 43.5
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 3.3e-27 125.9 206 45.6
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 3.3e-27 125.9 195 42.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 9.7e-27 124.4 204 45.1
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.2e-26 123.2 196 44.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.2e-26 123.2 171 43.3
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 3.7e-26 122.5 200 46.0
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 3.7e-26 122.5 205 45.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 3.7e-26 122.5 206 43.2
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 8.2e-26 121.3 170 45.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.1e-25 119.4 236 38.6
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 3.1e-25 119.4 193 43.5
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.3e-25 118.6 201 41.3
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 3.4e-24 115.9 200 38.5
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 3.4e-24 115.9 179 42.5
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.5e-24 115.5 201 40.3
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 5.9e-24 115.2 182 41.8
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 7.7e-24 114.8 203 40.4
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 7.7e-24 114.8 203 40.4
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.0e-23 114.4 202 38.1
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.7e-23 113.6 197 41.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.2e-23 113.2 155 40.6
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 6.5e-23 111.7 201 37.8
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 6.5e-23 111.7 193 44.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.4e-22 110.5 172 40.1
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 1.4e-22 110.5 203 37.9
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.5e-22 109.8 167 41.9
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 3.2e-22 109.4 195 42.1
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.2e-22 109.4 170 43.5
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.2e-21 107.5 194 40.2
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.6e-21 107.1 199 40.7
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.1e-21 106.7 196 38.3
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 3.6e-21 105.9 149 47.0
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.9e-21 104.8 208 38.0
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.8e-20 103.6 202 37.6
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-20 103.6 187 38.0
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 3.0e-20 102.8 200 40.5
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.0e-20 102.8 201 40.3
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.0e-20 102.8 201 40.3
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 5.1e-20 102.1 204 40.7
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.1e-19 100.9 196 37.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.5e-19 100.5 207 36.7
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.0e-19 100.1 200 38.0
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-19 100.1 194 36.1
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-19 99.4 199 36.2
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 5.7e-19 98.6 197 38.6
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 5.7e-19 98.6 103 54.4
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-19 98.6 103 53.4
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 5.7e-19 98.6 194 37.6
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 5.7e-19 98.6 103 53.4
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 5.7e-19 98.6 152 42.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 5.7e-19 98.6 147 43.5
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 7.4e-19 98.2 194 39.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-18 97.4 194 36.1
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-18 97.4 194 36.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 2.2e-18 96.7 184 39.7
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-18 96.7 197 35.5
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 2.8e-18 96.3 183 39.9
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 2.8e-18 96.3 142 43.7
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 6.3e-18 95.1 146 45.9
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 8.2e-18 94.7 183 37.7
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 3.1e-17 92.8 204 37.3
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-17 92.8 62 71.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-17 92.8 62 71.0
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 7.0e-17 91.7 146 43.2
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 9.1e-17 91.3 192 36.5
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.2e-16 90.9 83 65.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 3.5e-16 89.4 192 35.9
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 3.5e-16 89.4 192 35.9
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 3.5e-16 89.4 198 37.9
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.3e-15 87.4 208 36.5
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 2.2e-15 86.7 92 56.5
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 3.8e-15 85.9 200 35.0
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 8.5e-15 84.7 195 37.9
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 8.5e-15 84.7 262 30.2
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.9e-14 83.6 204 35.8
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-14 83.2 204 35.8
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.2e-14 82.8 169 37.3
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.2e-14 82.4 206 30.1
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 5.5e-14 82.0 204 35.3
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 3.6e-13 79.3 174 36.8
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.6e-13 79.3 197 33.0
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.1e-13 78.6 197 32.5
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.4e-12 77.4 91 49.5
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.8e-12 77.0 194 32.5
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 5.2e-12 75.5 194 32.0
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 6.7e-12 75.1 144 32.6
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 6.7e-12 75.1 144 32.6
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-11 73.6 143 34.3
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 9.7e-11 71.2 144 32.6
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-10 70.5 144 32.6
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 3.7e-10 69.3 97 39.2
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 3.7e-10 69.3 97 39.2
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.4e-09 67.4 184 32.1
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.4e-09 66.6 172 33.1
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 6.5e-07 58.5 76 44.7
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 8.5e-07 58.2 70 40.0
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 2.5e-06 56.6 74 43.2
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 3.2e-06 56.2 46 54.3
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 9.4e-06 54.7 110 36.4


User provided reference genes

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