Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.7e-241 838.2 409 100.0
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.8e-208 729.2 409 87.0
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.9e-202 709.1 417 84.2
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 8.3e-198 693.7 415 81.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-197 693.3 415 81.7
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 9.2e-197 690.3 411 82.2
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-196 689.9 415 81.4
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.1e-184 648.7 397 81.1
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 4.0e-184 648.3 410 77.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-183 646.7 412 76.7
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.6e-183 645.6 419 76.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 5.8e-183 644.4 409 77.3
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.5e-183 644.0 409 76.3
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.7e-182 642.9 409 76.0
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.1e-181 640.2 399 76.7
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.4e-181 639.0 409 75.6
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.1e-181 638.3 409 75.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 2.1e-180 636.0 409 76.3
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 4.6e-180 634.8 409 76.5
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.3e-179 633.3 408 76.0
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 5.1e-179 631.3 409 75.3
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.1e-178 630.2 410 76.6
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 9.5e-178 627.1 406 75.1
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 2.8e-177 625.5 399 75.9
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 4.7e-177 624.8 409 76.5
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 6.2e-177 624.4 411 74.7
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-174 616.3 409 73.6
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 2.2e-174 615.9 409 74.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.1e-173 613.6 402 72.4
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 2.4e-173 612.5 410 74.1
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 3.2e-173 612.1 409 73.8
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 4.2e-173 611.7 389 77.1
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.6e-172 609.8 409 73.1
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.7e-172 609.0 397 75.6
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 6.0e-172 607.8 403 72.7
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.3e-171 606.7 411 74.0
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.3e-171 605.9 409 72.4
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 5.1e-171 604.7 420 70.5
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 6.6e-171 604.4 408 71.6
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.1e-170 603.6 390 74.4
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.9e-170 602.8 390 74.9
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.9e-170 602.8 403 73.2
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 5.6e-170 601.3 401 74.3
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.8e-169 599.0 411 71.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 3.6e-169 598.6 402 72.9
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 4.7e-169 598.2 391 73.9
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 6.2e-169 597.8 409 71.6
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.1e-168 597.0 394 73.4
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.1e-168 597.0 411 70.1
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.4e-168 596.7 394 73.4
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.4e-168 596.7 389 72.2
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 9.0e-168 594.0 390 73.3
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 5.8e-167 591.3 403 72.0
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 5.8e-167 591.3 407 70.3
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 9.9e-167 590.5 408 70.1
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.7e-166 589.7 390 74.1
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.2e-166 589.3 414 71.0
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.9e-166 589.0 392 73.7
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 6.4e-166 587.8 392 73.7
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 6.4e-166 587.8 389 72.8
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.4e-165 586.6 401 72.6
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.9e-165 586.3 387 73.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.9e-165 586.3 387 73.9
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.9e-165 586.3 405 71.4
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.4e-165 585.9 387 73.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 9.3e-165 583.9 393 72.3
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.2e-164 583.6 410 70.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.6e-164 583.2 384 74.2
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 3.5e-164 582.0 386 74.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 3.5e-164 582.0 386 74.6
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 4.6e-164 581.6 387 72.6
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 7.8e-164 580.9 411 68.9
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.0e-163 580.5 409 71.6
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.7e-163 579.7 386 72.0
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 5.1e-163 578.2 388 73.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.5e-162 575.9 410 70.0
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.3e-162 575.5 387 73.1
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 5.6e-162 574.7 386 71.2
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 5.6e-162 574.7 392 70.7
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.1e-160 570.5 410 70.2
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.8e-160 569.7 408 70.1
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 4.0e-160 568.5 396 72.0
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 4.0e-160 568.5 394 70.6
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 9.0e-160 567.4 366 76.8
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.2e-159 567.0 406 70.0
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.5e-159 566.6 400 70.8
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.0e-159 566.2 396 71.2
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-158 563.5 410 68.5
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 3.8e-158 562.0 408 69.9
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.4e-157 560.1 398 70.4
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.4e-157 560.1 395 70.9
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.4e-157 560.1 410 69.0
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.6e-156 556.6 411 70.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.6e-156 556.6 387 72.6
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 2.7e-156 555.8 357 76.8
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 4.6e-156 555.1 395 70.4
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 6.0e-156 554.7 392 69.1
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 7.9e-156 554.3 412 66.7
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 8.7e-155 550.8 407 68.1
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.1e-154 550.4 391 68.8
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 9.6e-154 547.4 417 69.3
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 3.7e-153 545.4 462 63.9
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.8e-152 543.1 399 69.2
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.8e-152 543.1 390 67.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 7.6e-151 537.7 393 67.2
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.7e-150 536.6 387 67.2
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 6.4e-150 534.6 386 69.2
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 4.6e-148 528.5 398 67.6
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.9e-146 523.1 409 65.0
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 9.6e-146 520.8 387 68.5
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 2.8e-145 519.2 385 66.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 2.8e-145 519.2 388 67.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 4.8e-145 518.5 388 67.5
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 8.2e-145 517.7 388 65.7
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.4e-144 516.9 388 67.8
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.4e-144 516.2 311 78.8
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 2.6e-143 512.7 388 66.2
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.2e-141 505.8 409 62.8
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.5e-140 502.3 386 64.2
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 3.0e-139 499.2 393 64.1
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.5e-138 496.1 412 62.1
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 3.3e-138 495.7 312 78.2
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 9.7e-138 494.2 338 70.4
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.8e-137 492.7 417 61.9
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.4e-136 490.3 401 63.3
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.0e-131 472.6 388 61.1
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.3e-129 467.2 410 59.5
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.2e-129 466.5 382 61.3
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.0e-127 459.9 283 78.4
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.3e-121 440.7 263 79.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 5.3e-112 408.7 283 71.4
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-107 394.0 250 75.6
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.8e-107 393.7 246 76.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.6e-100 370.5 283 65.4
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 5.7e-98 362.1 417 47.7
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.2e-90 337.8 400 46.8
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.2e-89 333.6 382 47.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.9e-89 332.4 234 68.8
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.0e-88 328.6 272 55.1
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 6.1e-84 315.5 249 60.2
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.4e-74 283.1 172 79.7
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-69 268.1 197 69.5
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.7e-65 254.2 295 44.7
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 2.4e-64 250.4 204 61.8
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 2.1e-60 237.3 169 69.2
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.2e-58 231.5 168 69.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.4e-48 198.0 169 59.2
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.6e-45 186.0 165 57.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.8e-44 183.7 146 62.3
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.4e-43 181.4 241 41.9
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 4.0e-43 179.9 118 76.3
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 7.4e-37 159.1 82 84.1
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 8.4e-33 145.6 235 39.1
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.1e-32 145.2 181 46.4
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.6e-31 139.8 295 33.2
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.3e-29 133.7 310 30.3
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 4.5e-26 123.2 247 34.4
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.4e-24 118.2 79 72.2
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.5e-24 116.3 64 79.7
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.6e-23 114.8 64 78.1
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.7e-23 114.0 64 78.1
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.5e-23 113.6 250 36.0
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 4.6e-23 113.2 325 28.6
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.1e-19 102.1 141 39.0
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 5.3e-19 99.8 122 45.9
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 2.2e-17 94.4 89 51.7
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.8e-14 84.7 73 57.5
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.3e-13 80.5 171 32.2
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.9e-09 67.4 38 73.7
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.1e-08 65.5 67 46.3
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.2e-08 63.9 119 37.0


User provided reference genes

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