Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 9.3e-89 330.5 169 100.0
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.4e-81 304.7 169 92.9
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.3e-77 293.5 169 90.5
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.1e-77 290.8 169 90.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 4.0e-76 288.5 161 91.9
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.5e-70 270.0 148 93.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 7.4e-70 267.7 168 79.8
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.1e-69 266.2 168 78.6
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 6.2e-69 264.6 175 81.1
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 9.0e-68 260.8 168 78.6
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.5e-67 260.0 170 77.1
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.5e-67 260.0 168 78.6
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 5.8e-67 258.1 169 77.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.6e-67 257.7 169 76.9
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.2e-66 256.1 170 77.1
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.2e-66 256.1 170 77.1
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 4.9e-66 255.0 169 76.9
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 8.4e-66 254.2 170 76.5
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.2e-64 250.4 169 76.9
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.2e-64 250.4 169 76.3
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.7e-64 249.2 171 76.6
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.7e-64 249.2 169 75.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.7e-64 249.2 169 75.1
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.7e-64 249.2 169 75.7
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 3.5e-64 248.8 171 77.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 6.0e-64 248.1 146 82.2
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.0e-63 247.3 168 73.8
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.3e-63 246.9 166 74.7
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.3e-63 246.9 169 75.7
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.8e-63 246.5 169 74.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.8e-63 246.5 166 74.1
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.3e-63 246.1 179 72.1
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.0e-63 245.7 169 74.6
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 3.0e-63 245.7 148 81.1
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 5.1e-63 245.0 168 72.6
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.1e-63 245.0 168 75.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 6.7e-63 244.6 170 75.3
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 8.7e-63 244.2 148 81.1
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.1e-62 243.8 168 72.6
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.1e-62 243.8 148 81.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.5e-62 243.4 168 75.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.3e-62 242.3 168 72.0
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 4.3e-62 241.9 171 75.4
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 5.7e-62 241.5 168 73.2
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 5.7e-62 241.5 174 72.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 7.4e-62 241.1 169 74.6
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.6e-62 240.7 170 74.1
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 9.6e-62 240.7 168 73.2
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.6e-62 240.7 169 74.6
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 9.6e-62 240.7 168 74.4
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.3e-61 240.4 169 71.0
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.6e-61 240.0 151 78.8
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.6e-61 240.0 169 72.2
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.6e-61 240.0 171 74.9
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 4.8e-61 238.4 169 73.4
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 6.3e-61 238.0 169 72.2
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 6.3e-61 238.0 152 77.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.4e-60 236.9 169 72.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.8e-60 236.5 147 78.9
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-60 236.1 148 77.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 4.1e-60 235.3 168 72.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 4.1e-60 235.3 163 72.4
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 4.1e-60 235.3 161 73.9
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.3e-60 235.0 166 71.1
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 6.9e-60 234.6 162 71.6
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 9.0e-60 234.2 177 69.5
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.2e-59 233.8 168 71.4
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.2e-59 233.8 170 71.8
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.5e-59 233.4 148 77.0
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 2.0e-59 233.0 172 72.1
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.6e-59 232.6 148 79.1
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.5e-59 231.9 166 71.7
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 5.9e-59 231.5 149 77.2
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.0e-58 230.7 149 77.2
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.3e-58 230.3 167 70.7
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.3e-58 230.3 191 64.9
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.7e-58 229.9 148 75.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.2e-58 229.6 174 69.5
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.9e-58 229.2 167 72.5
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 2.9e-58 229.2 165 72.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 5.0e-58 228.4 147 76.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 6.5e-58 228.0 146 76.7
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.5e-58 228.0 162 70.4
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 8.5e-58 227.6 146 76.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 8.5e-58 227.6 165 71.5
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-57 227.3 148 75.0
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.1e-57 227.3 148 75.0
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.9e-57 226.5 147 76.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.9e-57 226.5 168 71.4
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 2.5e-57 226.1 168 69.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.5e-57 226.1 144 77.8
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 3.2e-57 225.7 167 71.3
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.2e-57 225.7 148 73.0
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.2e-57 225.7 169 71.6
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.2e-57 225.7 169 71.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.2e-57 225.7 168 69.0
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 4.2e-57 225.3 148 73.6
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 5.5e-57 224.9 148 75.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 9.3e-57 224.2 167 71.3
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-56 223.4 148 77.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.1e-56 223.0 177 65.5
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.1e-56 223.0 165 69.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 4.6e-56 221.9 148 76.4
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.3e-55 219.5 148 75.0
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.3e-55 219.5 212 57.5
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 3.0e-55 219.2 168 69.0
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-54 217.2 168 67.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.3e-54 215.7 156 68.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.7e-54 214.9 177 63.3
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.3e-53 213.8 180 61.7
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.8e-53 212.6 160 68.1
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-52 209.9 163 69.9
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-52 209.9 163 69.9
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-52 209.9 163 69.9
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-52 209.5 163 69.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 5.3e-52 208.4 162 67.9
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.1e-52 207.6 164 65.9
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.2e-51 207.2 150 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.9e-51 204.9 150 64.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 7.7e-51 204.5 178 64.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 7.7e-51 204.5 178 64.0
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.7e-50 203.4 168 62.5
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 4.2e-49 198.7 124 80.6
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.2e-49 198.0 126 77.0
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.2e-48 197.2 156 60.9
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.6e-48 196.8 168 63.7
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-48 196.4 178 61.8
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.4e-47 193.7 149 66.4
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 8.8e-47 191.0 150 66.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.5e-46 190.3 131 74.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.0e-46 189.9 161 59.6
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.0e-46 189.9 147 61.9
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.7e-45 186.8 168 62.5
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.2e-45 186.4 121 76.0
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.1e-44 184.1 162 61.7
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.4e-44 183.7 152 59.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.8e-44 183.3 159 63.5
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.1e-44 182.6 149 60.4
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-43 180.6 149 64.4
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.2e-43 180.6 136 66.9
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 5.0e-42 175.3 107 82.2
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 6.5e-42 174.9 121 71.9
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-41 173.3 108 77.8
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 5.5e-41 171.8 170 55.3
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 7.9e-40 167.9 193 55.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-36 157.5 126 63.5
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.8e-36 156.8 108 71.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.6e-35 153.7 94 78.7
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.8e-34 149.1 111 67.6
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 5.5e-33 145.2 82 82.9
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.6e-32 143.7 90 77.8
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 4.0e-31 139.0 132 56.8
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 3.6e-24 115.9 178 42.7
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 6.8e-23 111.7 101 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.1e-20 102.4 93 54.8
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 5.9e-19 98.6 141 40.4
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 5.0e-18 95.5 75 66.7
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 6.5e-18 95.1 165 35.2
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 8.3e-13 78.2 87 48.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.5e-09 67.4 169 28.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-09 67.4 68 52.9
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.1e-08 63.5 56 58.9
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 6.8e-07 58.5 68 52.9
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 3.4e-06 56.2 38 86.8


User provided reference genes

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