Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.5e-164 580.9 289 100.0
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.0e-149 533.5 289 90.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.5e-148 528.9 289 90.3
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-135 486.5 272 88.6
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 7.1e-135 484.2 272 88.6
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.6e-131 473.0 273 84.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.8e-130 469.5 278 82.4
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.1e-130 468.8 288 82.6
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 6.4e-128 461.1 282 79.4
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 5.4e-127 458.0 273 81.7
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.0e-125 453.8 272 82.4
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 3.3e-124 448.7 272 81.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.8e-122 443.0 288 77.1
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.4e-122 442.6 250 84.4
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 4.0e-122 441.8 273 79.1
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 6.9e-122 441.0 275 78.9
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 9.0e-122 440.7 272 80.1
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.2e-121 440.3 275 78.2
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-121 440.3 284 76.4
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-121 439.1 286 76.2
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.4e-121 438.7 278 78.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 9.9e-121 437.2 272 77.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.3e-120 436.8 273 78.0
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.3e-120 436.8 271 78.6
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.8e-120 435.3 278 77.3
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 4.9e-120 434.9 279 78.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.9e-119 433.0 278 77.0
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.4e-119 432.6 260 80.8
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.2e-119 431.8 272 77.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.2e-119 431.8 275 76.7
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 9.3e-119 430.6 265 78.1
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 9.3e-119 430.6 280 76.4
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.9e-117 425.2 245 83.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.9e-117 425.2 239 85.8
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.1e-117 424.9 266 77.8
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 6.6e-117 424.5 266 77.8
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.5e-116 422.5 266 77.1
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 3.3e-116 422.2 271 76.4
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 3.3e-116 422.2 270 76.7
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 4.3e-116 421.8 256 78.9
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.3e-115 420.2 249 81.1
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.6e-115 419.9 256 78.9
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.1e-115 419.5 253 80.6
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.6e-115 418.7 256 78.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 6.9e-114 414.5 321 66.7
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.6e-113 412.5 279 72.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.4e-113 412.1 279 72.8
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.4e-113 412.1 279 72.8
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.4e-113 412.1 242 82.6
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 3.4e-113 412.1 260 76.5
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.8e-113 411.4 270 74.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 5.8e-113 411.4 288 74.0
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 9.9e-113 410.6 255 76.5
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.7e-112 409.8 281 71.9
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.7e-112 409.8 272 74.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 2.2e-112 409.5 281 72.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 2.2e-112 409.5 281 72.6
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.9e-112 409.1 291 70.4
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 6.4e-112 407.9 251 78.9
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 8.4e-112 407.5 253 78.7
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.4e-111 406.8 273 72.2
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.4e-111 406.8 268 74.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 4.2e-111 405.2 248 76.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.2e-110 403.7 274 73.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.0e-109 400.6 248 75.8
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 3.0e-109 399.1 278 71.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.9e-109 398.7 283 72.1
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 6.7e-109 397.9 292 70.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.6e-108 394.8 263 74.5
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.2e-107 391.3 271 71.2
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 4.0e-106 388.7 248 75.8
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.3e-106 388.3 268 71.6
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.3e-106 388.3 268 71.6
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.2e-105 387.1 244 75.8
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.5e-105 386.7 254 73.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 2.6e-105 386.0 249 75.5
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 5.8e-105 384.8 275 69.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.3e-104 383.6 268 70.9
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.2e-103 378.6 268 71.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.2e-102 377.1 270 70.0
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 7.4e-100 367.9 272 67.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 2.1e-99 366.3 272 66.2
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.1e-98 362.5 270 66.3
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.2e-97 360.5 205 83.9
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.7e-96 356.7 270 64.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.2e-96 356.3 239 72.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 5.5e-95 351.7 269 65.1
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.5e-94 349.0 207 79.7
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.6e-94 348.6 259 68.0
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 7.4e-92 341.3 273 63.4
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.7e-91 339.0 271 64.6
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.2e-88 329.7 284 61.6
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.2e-87 325.5 301 58.5
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.7e-86 322.8 301 58.8
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 6.1e-86 321.6 273 59.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.8e-85 320.1 276 58.7
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 8.8e-85 317.8 273 63.0
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.3e-84 315.5 271 61.6
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 6.3e-83 311.6 272 61.4
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.4e-82 309.7 189 78.3
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.7e-80 303.5 265 60.4
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.2e-80 303.1 169 82.8
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.6e-78 297.0 249 61.8
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.6e-78 297.0 239 64.0
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.7e-75 287.0 273 57.5
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.8e-75 286.2 264 59.5
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 8.5e-72 274.6 260 52.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 9.4e-71 271.2 166 78.9
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 6.1e-70 268.5 356 48.6
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.9e-65 251.9 156 77.6
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.0e-61 239.6 172 70.9
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.7e-59 233.8 298 46.0
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.9e-57 225.3 239 52.3
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 4.0e-53 212.6 215 50.7
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.5e-52 210.7 253 46.2
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.4e-44 183.0 114 74.6
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 9.8e-44 181.4 251 42.2
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.1e-42 177.9 128 69.5
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-42 176.4 168 56.0
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-35 153.3 85 84.7
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-32 143.7 107 64.5
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.8e-29 134.0 75 85.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-28 131.3 131 55.0
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.2e-25 121.3 88 68.2
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 5.8e-20 102.4 85 62.4
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.3e-19 101.3 220 32.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.0e-16 90.1 74 63.5
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 7.3e-15 85.5 84 52.4
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 4.7e-14 82.8 66 60.6
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.8e-13 79.0 38 89.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-10 70.5 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-10 70.5 37 86.5
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 7.1e-10 68.9 58 62.1
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-09 68.2 58 55.2
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-06 57.4 42 64.3


User provided reference genes

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