Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 6.6e-131 470.7 235 100.0
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.4e-111 405.2 241 84.6
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.9e-106 389.4 241 81.7
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.8e-104 382.9 241 81.3
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.9e-102 375.6 241 80.5
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.1e-96 357.1 237 77.2
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.1e-84 316.2 181 84.5
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 9.6e-82 307.4 233 65.7
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 3.2e-77 292.4 242 67.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 7.1e-77 291.2 242 62.0
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.0e-75 287.3 235 63.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 6.7e-75 284.6 242 62.8
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 9.6e-74 280.8 234 62.0
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.1e-72 277.3 242 61.2
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 4.1e-72 275.4 242 61.2
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.3e-72 275.0 241 60.2
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.2e-71 273.9 267 56.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 5.9e-71 271.6 243 60.5
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 6.5e-70 268.1 235 60.0
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.1e-69 267.3 220 63.6
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.9e-69 266.5 203 65.5
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 4.2e-69 265.4 242 58.7
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.2e-68 263.8 237 60.8
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.5e-68 262.3 236 62.3
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.3e-67 260.4 242 58.3
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 3.9e-67 258.8 237 62.0
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.1e-67 258.5 236 58.5
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.1e-67 258.5 236 58.5
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-66 256.9 235 56.2
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.5e-66 256.9 237 59.1
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.5e-66 256.1 239 59.4
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.3e-66 255.8 235 57.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 5.7e-66 255.0 236 58.9
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 7.4e-66 254.6 235 58.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-65 253.8 235 56.2
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.2e-65 253.1 235 57.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 4.8e-65 251.9 237 54.9
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 4.8e-65 251.9 229 60.3
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.8e-65 251.9 238 58.8
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 6.3e-65 251.5 234 58.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.4e-64 249.6 238 55.9
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 5.3e-64 248.4 230 57.0
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.5e-63 246.9 230 55.2
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-63 246.9 230 56.5
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-63 246.9 230 56.5
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.0e-63 246.5 244 53.7
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 2.6e-63 246.1 242 57.9
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.4e-63 245.7 229 57.2
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.3e-62 243.8 292 48.6
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.3e-62 243.8 230 55.2
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.7e-62 243.4 230 55.7
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.7e-62 243.4 236 55.1
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.2e-62 243.0 237 56.1
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.9e-62 242.7 230 55.7
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 5.0e-62 241.9 202 60.9
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.1e-61 240.7 233 54.5
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.4e-61 240.4 202 60.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.4e-61 240.4 237 54.4
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.9e-61 240.0 258 53.9
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-61 238.8 208 58.7
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-61 238.8 208 58.7
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.1e-60 236.5 244 52.9
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.8e-59 233.4 239 54.4
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.3e-59 233.0 237 54.9
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.0e-59 232.6 214 57.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-59 231.5 206 58.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.7e-59 231.5 239 53.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.1e-58 230.7 215 54.4
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 4.3e-58 228.8 215 56.7
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-57 226.9 213 56.3
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.7e-57 226.9 241 52.3
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 6.3e-57 224.9 230 51.7
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 2.4e-56 223.0 234 50.9
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 2.4e-56 223.0 239 54.8
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 4.1e-56 222.2 226 55.3
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 9.1e-56 221.1 235 54.9
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.0e-55 219.9 233 51.9
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.4e-55 219.2 225 52.9
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 4.5e-55 218.8 240 55.0
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.5e-55 218.8 234 54.7
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.3e-54 217.2 231 50.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.3e-54 217.2 239 51.9
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.7e-54 216.9 210 52.9
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.5e-54 214.9 206 55.8
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.1e-53 214.2 235 50.2
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-53 213.0 215 53.5
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.2e-53 212.2 205 53.7
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.5e-53 211.8 235 49.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 7.2e-53 211.5 206 60.7
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.7e-52 209.5 233 51.5
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 3.6e-52 209.1 236 52.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.1e-52 208.4 234 49.6
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 7.9e-52 208.0 234 50.9
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.0e-51 206.1 214 50.5
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 8.8e-51 204.5 239 50.2
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 3.3e-50 202.6 233 50.2
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 4.4e-50 202.2 231 50.6
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-49 200.7 205 53.7
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 2.2e-49 199.9 229 50.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.8e-49 199.5 239 49.8
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 3.7e-49 199.1 239 49.4
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.7e-49 199.1 241 49.8
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.4e-48 197.2 255 49.8
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-48 196.8 215 51.6
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 2.0e-47 193.4 231 46.3
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.6e-47 193.0 232 49.1
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.0e-46 191.0 230 48.7
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.0e-46 191.0 243 51.4
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 2.2e-46 189.9 235 47.7
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-44 183.7 204 51.0
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 2.7e-44 183.0 232 48.3
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.7e-44 183.0 174 56.3
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 8.0e-44 181.4 230 49.6
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 5.2e-43 178.7 243 45.7
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.5e-42 177.2 172 56.4
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.8e-40 170.2 241 43.2
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 5.3e-40 168.7 234 45.3
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.0e-39 166.8 235 44.7
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.7e-39 166.4 242 44.6
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.7e-39 166.4 121 66.9
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-39 165.6 173 50.9
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.0e-38 164.5 237 46.4
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-38 162.9 191 47.6
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 2.9e-38 162.9 164 48.8
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 2.9e-38 162.9 203 44.3
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.2e-36 157.5 230 43.9
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 2.7e-36 156.4 187 52.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.0e-35 154.5 239 42.3
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 8.8e-35 151.4 234 42.7
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 4.1e-32 142.5 109 64.2
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 4.1e-32 142.5 168 48.2
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-30 137.1 182 46.2
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.1e-29 134.4 99 71.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 4.2e-29 132.5 194 42.3
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 6.8e-27 125.2 175 44.6
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.8e-27 125.2 145 48.3
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.4e-24 116.7 241 38.2
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.4e-24 116.7 204 35.8
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.9e-23 112.1 194 38.7
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.4e-19 100.9 152 41.4
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.4e-19 100.9 152 41.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.0e-16 88.6 91 50.5
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.5e-15 86.3 148 39.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.5e-15 86.3 91 50.5
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-14 84.7 91 49.5
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.3e-14 84.3 201 33.3
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 3.0e-14 83.2 91 48.4
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.1e-13 81.3 158 32.9
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-13 80.9 120 37.5
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-12 77.0 101 47.5
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 3.6e-12 76.3 83 49.4
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 2.3e-11 73.6 88 44.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 6.8e-11 72.0 39 92.3
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 6.8e-11 72.0 39 92.3
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-10 68.9 67 52.2
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-10 68.9 76 48.7
FAN28G2224 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.2e-08 61.6 68 51.5


User provided reference genes

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