Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.1e-165 586.6 310 100.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.4e-125 453.4 307 80.8
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.7e-110 403.3 309 75.1
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 4.2e-109 398.7 303 75.2
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 5.5e-109 398.3 309 75.1
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 3.5e-108 395.6 303 75.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.7e-73 280.4 187 82.9
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.2e-73 280.0 260 63.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.0e-71 273.5 292 58.6
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.5e-71 272.7 260 61.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 7.2e-69 265.0 266 63.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 8.0e-68 261.5 311 54.7
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.4e-67 260.8 267 62.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.4e-67 260.8 267 62.5
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.5e-66 257.3 288 56.6
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 2.0e-66 256.9 307 55.7
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.7e-65 253.8 304 54.3
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 5.4e-64 248.8 277 56.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.6e-63 247.3 303 55.4
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 5.9e-63 245.4 301 55.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 2.3e-62 243.4 272 61.4
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 6.5e-62 241.9 267 56.9
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.2e-60 237.7 294 53.4
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.2e-60 237.7 285 57.9
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.6e-60 237.3 211 65.9
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 2.1e-60 236.9 289 55.7
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 5.2e-59 232.3 310 51.6
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 5.2e-59 232.3 220 65.0
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.2e-58 231.1 287 54.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.5e-58 230.7 180 75.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.5e-58 230.7 220 64.5
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.0e-58 230.3 303 50.8
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 5.7e-58 228.8 215 63.3
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 4.9e-57 225.7 312 52.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.3e-57 225.3 227 63.0
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 8.3e-57 224.9 314 50.3
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 8.3e-57 224.9 311 52.1
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.8e-56 223.8 291 53.6
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 7.0e-56 221.9 301 52.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.6e-55 220.7 283 54.1
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.9e-55 218.8 323 50.2
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 5.9e-55 218.8 223 63.2
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.3e-54 217.6 254 57.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.3e-54 217.6 303 49.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.3e-54 217.6 215 60.9
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.3e-54 216.9 303 50.2
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.3e-54 216.9 320 49.4
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.9e-54 216.5 238 58.4
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 2.9e-54 216.5 289 50.5
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.8e-54 216.1 312 49.0
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 8.6e-54 214.9 252 54.0
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.1e-53 214.5 258 56.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.1e-53 214.5 304 49.7
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.5e-53 214.2 313 48.9
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 4.3e-53 212.6 213 62.9
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 7.3e-53 211.8 289 51.9
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.2e-52 211.1 209 60.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.6e-52 210.7 314 51.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 4.7e-52 209.1 260 53.5
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 6.1e-52 208.8 293 49.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.0e-51 208.0 237 59.1
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.0e-51 208.0 263 56.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.4e-51 207.6 257 54.1
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.4e-51 207.6 290 49.7
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 2.3e-51 206.8 267 52.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 3.0e-51 206.5 271 52.0
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.0e-51 206.1 304 48.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 5.2e-51 205.7 229 55.5
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 5.2e-51 205.7 229 55.5
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 5.2e-51 205.7 304 48.0
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 6.8e-51 205.3 197 63.5
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.2e-50 204.5 287 49.8
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.5e-50 204.1 266 52.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.5e-50 204.1 232 54.3
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 2.0e-50 203.8 229 55.5
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 2.0e-50 203.8 269 52.8
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.0e-50 203.8 260 50.4
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 3.4e-50 203.0 225 56.4
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 4.4e-50 202.6 229 55.0
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.4e-50 202.6 196 61.7
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 9.8e-50 201.4 325 45.2
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.7e-49 200.7 293 48.5
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.2e-49 200.3 254 53.9
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.2e-49 200.3 222 60.8
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 3.7e-49 199.5 268 50.0
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 3.7e-49 199.5 294 48.0
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.9e-49 199.1 197 62.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 6.4e-49 198.7 222 60.4
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 8.3e-49 198.4 294 50.0
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.4e-48 197.6 286 49.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.2e-48 196.4 274 51.5
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.2e-48 196.4 273 51.3
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.1e-48 196.1 300 49.3
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 4.1e-48 196.1 313 47.3
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 5.4e-48 195.7 265 50.9
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 9.2e-48 194.9 270 51.1
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.2e-47 194.5 272 51.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.0e-47 193.7 291 47.4
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 2.7e-47 193.4 426 38.0
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.5e-47 193.0 264 50.0
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.9e-45 187.2 254 50.4
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.3e-45 186.4 158 66.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 6.2e-44 182.2 306 45.8
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.1e-43 181.4 312 45.5
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.8e-43 180.6 360 40.8
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.3e-43 180.3 240 51.2
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 3.1e-43 179.9 266 47.7
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 6.8e-43 178.7 212 53.8
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.5e-42 177.6 142 71.8
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.5e-42 175.3 198 58.1
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 9.8e-42 174.9 141 70.9
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 8.3e-41 171.8 153 64.7
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.9e-40 170.6 325 41.2
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.2e-39 167.9 222 50.9
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-39 167.5 150 68.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 5.0e-38 162.5 256 46.9
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.3e-37 159.8 195 52.8
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.2e-36 157.9 288 41.7
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.6e-36 157.5 106 80.2
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.8e-36 156.8 153 57.5
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 6.8e-35 152.1 165 57.6
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 9.9e-34 148.3 108 78.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 8.3e-33 145.2 144 57.6
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 8.3e-33 145.2 196 49.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 4.1e-32 142.9 196 49.5
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 5.4e-32 142.5 246 43.5
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.5e-31 139.8 141 58.9
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.3e-29 132.9 134 62.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.1e-27 128.3 84 82.1
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 4.0e-27 126.3 133 61.7
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 5.8e-26 122.5 204 45.1
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.2e-25 120.6 116 61.2
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-23 114.8 109 58.7
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.1e-19 100.1 132 50.0
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.4e-18 96.7 99 59.6
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 9.9e-18 95.1 99 63.6
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 2.9e-17 93.6 115 49.6
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.9e-16 90.9 61 82.0
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 2.4e-16 90.5 168 41.1
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 9.3e-16 88.6 98 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 4.6e-15 86.3 95 48.4
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.7e-14 84.3 94 47.9
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.3e-14 84.0 78 56.4
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.6e-14 82.4 122 54.1
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.6e-14 82.4 114 51.8
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.2e-12 75.9 108 49.1
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.1e-11 73.6 46 87.0
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.9e-11 72.4 49 83.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.5e-07 60.1 127 37.0


User provided reference genes

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