Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.8e-86 322.8 187 100.0
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 5.9e-66 254.6 196 79.6
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 7.7e-66 254.2 187 78.1
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.7e-65 253.1 187 77.5
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.6e-39 166.8 145 70.3
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 8.0e-39 164.5 100 84.0
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 8.0e-39 164.5 196 59.2
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.8e-38 163.3 197 57.4
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 6.4e-36 154.8 146 65.8
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.1e-35 154.1 171 53.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 4.1e-35 152.1 186 55.9
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 4.1e-35 152.1 194 48.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 5.4e-35 151.8 189 50.8
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 5.4e-35 151.8 100 76.0
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 7.0e-35 151.4 124 72.6
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 9.2e-35 151.0 193 50.3
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.2e-34 150.6 187 52.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.2e-34 150.6 146 56.8
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.2e-34 150.6 153 57.5
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.7e-34 149.4 149 57.0
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 3.5e-34 149.1 199 56.3
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 3.5e-34 149.1 199 58.8
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 4.6e-34 148.7 182 56.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 5.9e-34 148.3 182 55.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 7.8e-34 147.9 188 49.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.0e-33 147.5 181 55.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.3e-33 147.1 175 58.9
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.3e-33 147.1 185 54.6
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.3e-33 147.1 97 76.3
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.3e-33 147.1 161 54.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.7e-33 146.7 170 62.4
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.3e-33 146.4 188 55.3
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.0e-33 146.0 188 52.7
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.9e-33 145.6 96 76.0
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.9e-33 145.6 96 76.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.9e-33 145.6 96 76.0
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.9e-33 145.6 97 77.3
Gorai.N013200 Gossypium raimondii HOM05D001962 ORTHO05D019237 3.9e-33 145.6 124 71.8
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 5.0e-33 145.2 95 77.9
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 6.6e-33 144.8 96 75.0
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.1e-32 144.1 97 77.3
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.1e-32 144.1 137 59.9
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.5e-32 143.7 202 50.0
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.5e-32 143.7 96 74.0
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.9e-32 143.3 188 50.0
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 3.3e-32 142.5 150 53.3
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.3e-32 142.5 150 53.3
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 3.3e-32 142.5 148 60.1
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 4.3e-32 142.1 127 58.3
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.3e-32 142.1 148 60.8
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 5.6e-32 141.7 96 75.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 7.3e-32 141.4 167 52.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 7.3e-32 141.4 95 75.8
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 7.3e-32 141.4 96 72.9
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 9.5e-32 141.0 96 72.9
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.2e-31 140.6 96 71.9
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.6e-31 140.2 127 57.5
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.6e-31 140.2 96 71.9
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.6e-31 140.2 190 47.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.6e-31 140.2 195 47.7
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.1e-31 139.8 185 45.9
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.8e-31 139.4 98 72.4
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.6e-31 139.0 93 75.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 3.6e-31 139.0 93 74.2
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 4.7e-31 138.7 97 73.2
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 6.2e-31 138.3 95 73.7
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 6.2e-31 138.3 187 48.1
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 8.0e-31 137.9 97 74.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 8.0e-31 137.9 147 54.4
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.0e-30 137.5 145 53.8
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.0e-30 137.5 94 71.3
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.0e-30 137.5 145 54.5
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.0e-30 137.5 91 75.8
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.0e-30 137.5 130 56.9
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.4e-30 137.1 172 49.4
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.4e-30 137.1 95 71.6
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.3e-30 136.3 193 46.1
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.0e-30 135.6 97 71.1
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.0e-30 135.6 97 71.1
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.8e-30 134.8 152 52.0
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.8e-30 134.8 148 60.1
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.2e-29 134.0 152 52.0
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.2e-29 134.0 92 72.8
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-29 133.7 152 51.3
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 2.6e-29 132.9 190 48.4
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.6e-29 132.9 100 68.0
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.4e-29 132.5 99 69.7
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.4e-29 132.5 95 69.5
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 5.8e-29 131.7 91 72.5
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 5.8e-29 131.7 91 72.5
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 7.5e-29 131.3 97 69.1
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 7.5e-29 131.3 100 68.0
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.9e-28 129.4 218 43.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.7e-28 129.0 88 72.7
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.7e-28 129.0 92 70.7
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 3.7e-28 129.0 189 50.3
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 4.9e-28 128.6 92 71.7
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 6.4e-28 128.3 94 67.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 8.3e-28 127.9 187 42.8
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.1e-27 127.5 216 41.7
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.1e-27 127.5 100 65.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.9e-27 126.7 97 66.0
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.4e-27 126.3 179 50.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 2.4e-27 126.3 95 71.6
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 5.4e-27 125.2 179 50.8
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.2e-26 124.0 83 74.7
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-26 123.6 82 75.6
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.6e-26 123.6 130 54.6
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.6e-26 123.6 140 54.3
Gohir.D08G146675 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.0e-26 121.7 106 70.8
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 7.8e-26 121.3 109 69.7
Gohir.D05G270500 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.0e-25 120.9 106 69.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.1e-24 117.5 78 74.4
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.5e-24 116.3 91 65.9
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 5.6e-24 115.2 77 75.3
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 7.3e-24 114.8 95 62.1
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 3.6e-23 112.5 118 65.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 6.2e-23 111.7 77 72.7
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 8.1e-23 111.3 77 74.0
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.5e-21 107.1 86 60.5
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 9.8e-21 104.4 78 64.1
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.2e-20 103.2 86 59.3
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.9e-20 102.8 72 72.2
Gohir.D10G193850 Gossypium hirsutum HOM05D005889 ORTHO05D007495 3.7e-20 102.4 68 75.0
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 2.4e-19 99.8 95 56.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.1e-19 99.0 98 52.0
Gohir.D11G251951 Gossypium hirsutum HOM05D005889 ORTHO05D047070 2.1e-18 96.7 68 70.6
Gorai.007G270400 Gossypium raimondii HOM05D005889 ORTHO05D047070 2.1e-18 96.7 68 70.6
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.7e-18 96.3 110 50.9
Gohir.D08G117450 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.7e-18 96.3 68 70.6
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 1.0e-17 94.4 109 50.5
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 1.0e-17 94.4 109 50.5
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 5.1e-17 92.0 59 78.0
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.1e-15 86.7 152 40.1
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.8e-14 81.6 61 73.8
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 5.8e-13 78.6 61 67.2
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.4e-11 73.9 86 48.8
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.1e-11 72.4 85 38.8
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 2.7e-10 69.7 57 57.9
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 3.5e-10 69.3 44 77.3
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 9.6e-08 61.2 136 36.8
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 6.2e-07 58.5 85 34.1


User provided reference genes

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