Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.5e-169 599.7 380 100.0
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 8.1e-131 471.1 386 81.1
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.7e-128 463.4 384 71.6
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.6e-123 446.8 389 74.8
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-106 390.6 383 65.8
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.0e-101 374.4 384 64.6
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.0e-101 374.4 384 64.3
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.7e-93 345.1 389 58.9
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.1e-90 336.3 389 58.6
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.6e-89 333.2 389 59.4
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-70 270.8 383 55.1
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 9.2e-66 255.0 400 49.0
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.6e-64 248.8 383 52.7
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.6e-64 248.8 383 52.7
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.0e-60 237.3 343 49.0
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.9e-58 230.7 386 46.1
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.4e-58 230.3 343 48.4
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.0e-58 228.8 343 47.8
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 3.3e-55 219.9 370 44.3
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.3e-55 219.9 381 47.2
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 2.3e-53 213.8 385 45.7
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.7e-51 206.5 378 44.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 4.9e-51 206.1 383 43.3
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.3e-48 198.0 414 39.4
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.7e-48 197.6 370 40.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.1e-47 194.9 389 39.3
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.1e-45 188.3 389 46.5
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.0e-44 184.1 373 42.1
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.5e-44 182.2 377 40.3
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 9.9e-44 181.8 364 51.1
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 6.0e-41 172.6 371 45.0
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.9e-39 167.5 396 37.6
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.9e-39 167.5 375 47.5
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.8e-38 163.7 364 45.1
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 6.2e-38 162.5 320 40.0
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 6.2e-38 162.5 320 40.0
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 9.9e-36 155.2 360 40.6
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 4.9e-35 152.9 347 49.3
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 8.4e-35 152.1 338 41.7
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 3.2e-34 150.2 363 43.0
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 5.4e-34 149.4 389 35.5
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 2.3e-32 144.1 362 36.2
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 5.1e-32 142.9 359 35.9
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 8.7e-32 142.1 381 36.7
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.5e-31 140.6 379 35.6
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.6e-31 138.7 364 35.4
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.8e-30 137.1 386 37.0
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.6e-30 136.7 378 33.9
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 4.8e-30 136.3 363 36.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.4e-29 134.0 361 40.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 6.9e-29 132.5 379 38.5
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.5e-28 131.3 379 34.6
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.7e-27 127.9 361 37.1
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 4.9e-27 126.3 370 36.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.1e-26 125.2 378 39.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.4e-26 124.8 389 32.4
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.4e-26 124.8 363 34.7
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 1.9e-26 124.4 374 43.6
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.4e-26 124.0 366 34.7
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 2.4e-26 124.0 360 34.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.2e-26 123.6 378 39.2
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 4.2e-26 123.2 376 42.0
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 4.2e-26 123.2 376 33.5
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 5.4e-26 122.9 361 44.3
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 9.3e-26 122.1 386 36.3
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 9.3e-26 122.1 387 37.5
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.6e-25 121.3 378 38.9
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 4.6e-25 119.8 386 35.2
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 7.8e-25 119.0 385 38.7
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.0e-24 118.6 371 30.7
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 3.0e-24 117.1 328 42.7
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 3.9e-24 116.7 376 33.5
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.1e-23 115.2 393 30.8
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.1e-23 115.2 374 31.3
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 9.6e-23 112.1 370 37.8
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.6e-22 111.3 381 32.5
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.8e-22 109.8 384 37.5
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 5.3e-21 106.3 380 32.9
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 6.9e-21 105.9 400 36.0
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 6.9e-21 105.9 367 30.0
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 1.2e-20 105.1 419 32.7
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.5e-20 104.8 361 31.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 2.0e-20 104.4 379 32.5
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.0e-20 104.4 377 31.6
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.0e-20 104.4 377 31.6
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 7.6e-20 102.4 376 31.4
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 8.4e-19 99.0 384 28.9
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.4e-18 98.2 373 30.8
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.4e-18 97.4 376 33.0
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.2e-18 97.1 274 41.6
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 3.2e-18 97.1 149 45.0
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 5.4e-18 96.3 213 38.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 9.3e-18 95.5 370 29.2
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 9.3e-18 95.5 352 33.5
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.2e-17 95.1 379 32.5
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.7e-17 94.0 399 27.3
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 3.5e-17 93.6 359 35.1
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 3.5e-17 93.6 373 32.2
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 7.9e-17 92.4 377 33.2
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.8e-16 91.3 371 30.7
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 6.7e-16 89.4 369 32.8
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.1e-15 88.6 380 33.7
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.1e-15 88.6 304 31.2
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 1.9e-15 87.8 315 33.3
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 4.8e-14 83.2 310 39.7
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 6.2e-14 82.8 192 38.5
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.1e-13 82.0 334 31.7
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 2.4e-13 80.9 243 36.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.4e-13 80.9 373 29.0
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 9.0e-13 79.0 374 29.1
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.5e-12 78.2 213 35.2
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.9e-11 73.9 234 34.2
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 3.8e-11 73.6 219 33.3
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 6.5e-11 72.8 356 31.7
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 6.5e-11 72.8 214 33.2
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 8.4e-11 72.4 219 33.3
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.9e-10 71.2 239 32.6
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 9.3e-10 68.9 228 34.2
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 9.3e-10 68.9 389 36.0
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.1e-09 67.8 364 29.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.7e-09 67.4 259 30.5
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 4.6e-09 66.6 320 29.7
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 6.0e-09 66.2 206 32.5
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 1.0e-08 65.5 161 38.5
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.3e-08 65.1 390 32.6
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 2.3e-08 64.3 207 33.3
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 2.3e-08 64.3 207 33.3
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 2.3e-08 64.3 392 25.5
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.0e-08 63.9 380 33.9
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.9e-08 63.5 365 30.7
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.9e-07 61.2 355 31.0
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 7.4e-07 59.3 116 40.5
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 7.4e-07 59.3 363 28.7
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 1.3e-06 58.5 91 41.8
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 1.6e-06 58.2 356 25.0


User provided reference genes

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