Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.4e-110 402.1 197 100.0
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 6.6e-100 367.5 197 90.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.5e-99 365.5 197 90.4
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.6e-98 362.8 197 88.3
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 3.1e-97 358.6 192 91.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.4e-96 355.1 192 89.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 9.8e-96 353.6 197 86.8
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 3.7e-95 351.7 193 89.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 6.4e-95 350.9 192 89.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.1e-91 340.1 192 86.5
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 4.7e-90 334.7 192 84.9
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 8.0e-90 334.0 194 84.0
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.6e-88 328.9 192 81.8
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.4e-88 328.6 192 83.3
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 2.2e-87 325.9 195 82.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.9e-87 324.7 195 82.1
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 6.4e-87 324.3 192 82.3
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.4e-87 324.3 195 81.5
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.1e-86 323.6 192 82.8
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.4e-86 323.2 210 78.1
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.4e-86 323.2 194 81.4
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.4e-86 322.4 192 82.3
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.4e-86 322.4 195 81.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.4e-86 322.4 194 81.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.7e-85 318.9 196 81.1
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.7e-85 318.9 192 79.7
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.5e-85 318.5 192 80.7
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 6.0e-85 317.8 192 80.2
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 6.0e-85 317.8 192 80.2
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 3.0e-84 315.5 195 80.0
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 6.6e-84 314.3 192 80.2
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 8.6e-84 313.9 192 78.6
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 1.9e-83 312.8 194 79.4
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 5.6e-83 311.2 195 79.0
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.6e-83 311.2 194 78.9
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.3e-83 310.8 192 79.7
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.3e-83 310.8 192 76.6
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.2e-82 310.1 194 78.9
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.2e-82 310.1 195 76.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.6e-82 309.7 196 80.6
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.6e-82 309.7 194 79.4
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.1e-82 309.3 194 78.9
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 4.7e-82 308.1 194 79.9
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.1e-81 307.0 194 78.4
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.1e-81 307.0 194 79.4
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.4e-81 306.6 194 79.4
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.8e-81 306.2 193 80.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.8e-81 306.2 192 77.1
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.1e-81 305.4 194 78.9
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.0e-81 305.1 194 77.8
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 5.2e-81 304.7 192 77.1
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 6.8e-81 304.3 192 77.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.2e-80 303.5 193 78.8
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.5e-80 303.1 194 80.9
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.0e-80 302.8 193 76.2
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.0e-80 302.8 193 76.2
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.0e-80 302.8 194 78.4
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.6e-80 302.4 184 80.4
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 3.4e-80 302.0 192 78.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 3.4e-80 302.0 192 78.1
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 3.4e-80 302.0 195 76.4
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 3.4e-80 302.0 193 76.2
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.4e-80 301.6 194 77.3
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.4e-80 301.6 195 75.9
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 4.4e-80 301.6 193 76.2
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 5.8e-80 301.2 194 77.8
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 7.5e-80 300.8 192 78.1
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 9.9e-80 300.4 195 75.4
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.7e-79 299.7 194 75.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 3.7e-79 298.5 192 77.1
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 3.7e-79 298.5 194 77.3
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 4.9e-79 298.1 192 77.6
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 4.9e-79 298.1 194 75.8
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.9e-79 298.1 193 76.7
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 6.4e-79 297.7 193 75.6
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 5.4e-78 294.7 192 75.0
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.2e-77 293.5 193 76.2
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 3.5e-77 292.0 193 75.1
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 4.6e-77 291.6 194 74.7
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.0e-77 291.2 193 74.6
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 6.0e-77 291.2 194 75.8
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 7.8e-77 290.8 193 75.1
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.0e-76 290.4 193 74.1
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.7e-76 289.7 192 75.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 5.1e-76 288.1 193 76.7
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.3e-75 285.0 192 73.4
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.3e-75 285.0 194 73.2
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 7.3e-75 284.3 202 71.3
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 7.3e-75 284.3 194 72.7
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.2e-74 283.5 192 74.5
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.2e-74 283.5 192 74.5
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 4.7e-74 281.6 194 72.7
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 6.2e-74 281.2 195 71.3
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.4e-73 280.0 181 77.3
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.0e-73 278.5 179 77.1
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.9e-73 277.3 170 79.4
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.2e-72 276.9 194 72.7
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.2e-72 276.9 192 71.9
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 5.8e-72 274.6 195 72.8
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-70 270.4 201 68.7
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 2.4e-70 269.2 194 70.1
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 7.8e-69 264.2 194 67.5
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 7.8e-69 264.2 178 74.7
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.0e-68 263.8 239 59.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-68 263.8 194 69.6
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.3e-68 262.7 194 69.1
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.7e-68 260.8 193 69.4
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.7e-68 260.8 193 69.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 4.3e-67 258.5 171 75.4
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 6.2e-66 254.6 171 76.6
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 8.1e-66 254.2 193 64.2
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 4.0e-65 251.9 197 62.4
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.5e-64 250.0 195 66.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-64 250.0 195 66.2
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.5e-64 250.0 195 66.2
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.7e-63 246.5 192 63.0
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.9e-63 245.7 184 67.9
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 8.4e-63 244.2 228 58.3
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 7.1e-62 241.1 193 62.2
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 6.0e-61 238.0 195 64.6
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.0e-60 237.3 193 64.8
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.7e-60 236.5 193 60.1
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.0e-60 235.7 192 61.5
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.6e-60 234.6 193 62.7
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.9e-57 224.6 171 70.8
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 9.9e-56 220.7 137 78.1
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 2.2e-55 219.5 200 55.0
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 7.6e-48 194.5 196 51.5
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.0e-47 194.1 132 73.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.9e-47 192.6 195 49.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.8e-47 192.2 173 57.8
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 7.1e-46 188.0 185 56.2
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 9.6e-43 177.6 169 59.8
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 6.2e-42 174.9 149 57.7
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.2e-40 170.6 93 87.1
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 9.3e-38 161.0 141 60.3
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 5.7e-35 151.8 193 44.6
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.0e-32 143.3 223 39.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 2.0e-32 143.3 197 39.1
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.9e-30 136.7 139 54.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-30 136.3 100 70.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.2e-30 135.6 84 82.1
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.7e-26 123.6 84 67.9
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.3e-23 114.0 72 79.2
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.0e-23 112.1 143 46.9
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.6e-21 105.9 93 54.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 3.0e-20 102.8 193 35.2
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.1e-09 67.8 135 43.7


User provided reference genes

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