Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.1e-53 213.0 101 100.0
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.1e-47 193.0 101 91.1
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.1e-47 193.0 101 91.1
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.3e-47 191.4 101 90.1
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.1e-45 186.4 101 86.1
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.0e-44 182.2 100 84.0
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.0e-44 182.2 101 84.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 4.5e-44 181.0 99 86.9
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.7e-43 179.1 99 84.8
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 3.8e-43 177.9 100 82.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.2e-42 174.5 97 84.5
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.2e-42 174.5 97 84.5
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 5.5e-42 174.1 100 83.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.5e-42 174.1 101 79.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 9.3e-42 173.3 99 84.8
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.1e-41 172.2 99 80.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.1e-40 167.5 99 81.8
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 7.4e-39 163.7 101 77.2
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.3e-38 162.9 102 76.5
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.6e-38 162.5 89 84.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.6e-38 162.5 99 73.7
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 2.1e-38 162.2 101 75.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.8e-38 161.8 99 74.7
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.8e-38 161.8 89 87.6
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 6.3e-38 160.6 99 76.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.1e-37 159.8 102 75.5
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.1e-37 159.8 99 77.8
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.1e-37 159.8 100 72.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.4e-37 159.5 103 75.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.8e-37 159.1 103 75.7
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.8e-37 159.1 103 75.7
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.4e-37 158.7 99 79.8
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.1e-37 158.3 103 75.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 4.1e-37 157.9 102 74.5
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 6.9e-37 157.1 99 75.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.9e-37 157.1 103 74.8
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.9e-37 157.1 103 74.8
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 6.9e-37 157.1 101 73.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.0e-37 156.8 97 78.4
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.2e-36 156.4 99 73.7
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.4e-36 154.8 99 73.7
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 4.5e-36 154.5 100 72.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.5e-36 154.5 99 71.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.5e-36 154.5 101 76.2
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.9e-36 154.1 99 70.7
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 7.6e-36 153.7 97 77.3
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.0e-35 153.3 101 72.3
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.0e-35 153.3 100 74.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.3e-35 152.9 101 72.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.3e-35 152.9 99 70.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.7e-35 152.5 88 81.8
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.9e-35 151.8 101 72.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.9e-35 151.8 95 76.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 5.0e-35 151.0 102 73.5
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.1e-34 149.8 101 73.3
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.1e-34 149.8 101 73.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.1e-34 149.8 99 70.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.9e-34 149.1 97 68.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 2.5e-34 148.7 102 73.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 3.2e-34 148.3 101 70.3
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 4.2e-34 147.9 104 72.1
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 5.5e-34 147.5 102 70.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.2e-34 147.1 97 71.1
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 9.3e-34 146.7 103 69.9
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 9.3e-34 146.7 95 73.7
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 9.3e-34 146.7 101 69.3
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 6.1e-33 144.1 89 77.5
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.0e-32 143.3 100 72.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.0e-32 143.3 100 72.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.3e-32 142.1 104 69.2
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.3e-32 142.1 102 69.6
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 5.1e-32 141.0 102 69.6
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 6.7e-32 140.6 97 68.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.5e-31 139.4 97 68.0
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.5e-31 139.4 102 67.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.9e-31 139.0 97 67.0
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 3.3e-31 138.3 104 65.4
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 3.3e-31 138.3 101 66.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 3.3e-31 138.3 88 71.6
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 5.7e-31 137.5 103 68.9
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 9.7e-31 136.7 104 67.3
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.6e-30 136.0 97 66.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.6e-30 136.0 87 75.9
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.6e-30 136.0 103 65.0
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.6e-30 136.0 97 66.0
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.2e-30 135.6 99 63.6
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.2e-30 135.6 102 67.6
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.8e-30 135.2 105 62.9
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 3.7e-30 134.8 97 64.9
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 3.7e-30 134.8 102 64.7
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.7e-30 134.8 99 66.7
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 6.3e-30 134.0 97 66.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.1e-29 133.3 105 66.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 3.1e-29 131.7 100 65.0
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.1e-29 131.7 92 63.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 5.3e-29 131.0 103 62.1
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 5.3e-29 131.0 103 62.1
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 9.0e-29 130.2 97 67.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 9.0e-29 130.2 97 67.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.2e-28 129.8 102 64.7
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.0e-28 129.0 102 64.7
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 3.4e-28 128.3 91 70.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 5.9e-28 127.5 104 62.5
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.7e-27 125.9 88 67.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.7e-27 125.9 74 71.6
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.7e-27 125.9 102 61.8
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.2e-27 125.6 97 60.8
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.9e-27 125.2 99 63.6
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.9e-27 125.2 89 69.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.9e-27 125.2 90 67.8
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 3.8e-27 124.8 103 63.1
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 8.5e-27 123.6 97 59.8
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.4e-26 122.9 127 52.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.4e-26 122.9 91 67.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.5e-26 122.1 89 69.7
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 3.2e-26 121.7 101 63.4
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 5.5e-26 120.9 73 72.6
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 5.5e-26 120.9 91 67.0
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.2e-25 119.8 101 60.4
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.6e-25 119.4 89 62.9
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.9e-24 114.8 82 59.8
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.1e-23 113.2 102 59.8
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.5e-23 112.8 101 58.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.5e-23 112.8 101 58.4
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 2.2e-22 109.0 73 74.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.2e-22 109.0 91 58.2
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-21 106.7 92 59.8
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 7.7e-20 100.5 87 57.5
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.8e-19 98.2 50 82.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.5e-19 97.4 91 57.1
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.1e-17 92.4 81 59.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 2.7e-17 92.0 76 64.5
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.7e-17 91.3 97 51.5
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.0e-16 90.1 73 68.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.4e-16 89.7 73 61.6
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.8e-16 89.4 76 63.2
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 2.0e-15 85.9 100 49.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.3e-15 85.1 73 61.6
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.8e-14 82.0 76 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 4.8e-14 81.3 98 51.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.6e-12 76.3 109 42.2
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.7e-11 72.8 80 50.0
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 2.5e-10 68.9 69 47.8
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 2.5e-10 68.9 52 59.6
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.2e-10 67.4 91 46.2
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.6e-09 66.2 39 74.4
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.7e-09 65.5 95 38.9
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.0e-08 63.5 49 69.4
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.0e-08 63.5 49 69.4
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 5.2e-08 61.2 94 37.2
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 2.0e-07 59.3 34 70.6
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 9.7e-07 57.0 59 47.5
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 2.2e-06 55.8 94 35.1


User provided reference genes

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