Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 5.1e-68 261.2 153 100.0
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.7e-31 139.8 135 60.0
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 3.7e-26 122.1 124 68.5
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 5.0e-23 111.7 119 56.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.3e-22 109.0 119 52.9
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 9.5e-22 107.5 119 53.8
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.6e-21 106.7 123 51.2
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.6e-21 106.7 123 51.2
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.4e-20 103.6 124 50.0
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 4.0e-20 102.1 120 54.2
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 2.2e-18 96.3 124 50.0
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 3.7e-18 95.5 120 46.7
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 1.9e-17 93.2 118 48.3
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 4.1e-17 92.0 120 45.8
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 4.1e-17 92.0 122 46.7
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 2.7e-16 89.4 122 45.1
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 2.7e-16 89.4 118 48.3
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 6.0e-16 88.2 122 44.3
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.7e-15 86.7 122 43.4
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.7e-15 86.7 121 47.1
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 3.0e-15 85.9 127 44.9
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 5.1e-15 85.1 120 45.8
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 5.1e-15 85.1 124 44.4
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 6.6e-15 84.7 127 48.0
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 6.6e-15 84.7 118 45.8
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 8.6e-15 84.3 118 43.2
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.5e-14 83.6 131 41.2
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.9e-14 83.2 118 43.2
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 3.3e-14 82.4 123 52.8
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 5.6e-14 81.6 130 41.5
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 5.6e-14 81.6 118 50.0
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.2e-13 80.5 140 39.3
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.2e-13 80.5 140 39.3
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 1.6e-13 80.1 130 40.8
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.6e-13 80.1 130 40.0
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.6e-13 80.1 144 38.2
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.6e-13 80.1 118 44.9
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 4.7e-13 78.6 139 39.6
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 4.7e-13 78.6 139 39.6
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 4.7e-13 78.6 133 39.8
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.1e-12 77.4 118 40.7
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.4e-12 77.0 133 39.1
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-12 77.0 139 38.8
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 4.0e-12 75.5 127 53.5
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 4.0e-12 75.5 129 39.5
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 4.0e-12 75.5 118 39.0
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 5.2e-12 75.1 125 39.2
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 6.8e-12 74.7 124 55.6
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 2.0e-11 73.2 118 40.7
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 4.4e-11 72.0 125 39.2
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 4.4e-11 72.0 123 41.5
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.8e-11 71.6 117 46.2
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 5.8e-11 71.6 117 39.3
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 7.6e-11 71.2 120 40.8
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 7.6e-11 71.2 122 41.0
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 9.9e-11 70.9 117 51.3
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.7e-10 70.1 125 40.8
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.2e-10 69.7 136 36.0
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.9e-10 69.3 137 35.8
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 3.8e-10 68.9 117 39.3
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.8e-10 68.9 150 33.3
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 3.8e-10 68.9 111 48.6
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 3.8e-10 68.9 132 35.6
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 4.9e-10 68.6 124 52.4
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 4.9e-10 68.6 125 43.2
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 4.9e-10 68.6 137 37.2
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 6.4e-10 68.2 122 40.2
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 6.4e-10 68.2 117 36.8
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-09 67.0 118 35.6
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 1.9e-09 66.6 120 39.2
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.4e-09 66.2 120 41.7
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 3.2e-09 65.9 117 34.2
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 4.1e-09 65.5 129 39.5
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 4.1e-09 65.5 118 45.8
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 5.4e-09 65.1 118 40.7
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 5.4e-09 65.1 118 38.1
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 7.1e-09 64.7 130 37.7
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 9.2e-09 64.3 125 36.0
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.2e-08 63.9 114 36.0
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.2e-08 63.9 119 38.7
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.2e-08 63.9 112 36.6
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 1.6e-08 63.5 119 39.5
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 2.7e-08 62.8 147 33.3
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 2.7e-08 62.8 166 30.7
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.5e-08 62.4 139 42.4
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.5e-08 62.4 117 36.8
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 6.0e-08 61.6 144 32.6
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 6.0e-08 61.6 114 37.7
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.3e-07 60.5 164 39.6
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.3e-07 60.5 118 38.1
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-07 60.1 35 80.0
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 1.7e-07 60.1 122 38.5
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.3e-07 59.7 36 72.2
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.3e-07 59.7 118 35.6
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.3e-07 59.7 35 74.3
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 3.0e-07 59.3 121 47.1
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 3.0e-07 59.3 121 33.1
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.9e-07 58.9 145 42.1
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 5.1e-07 58.5 129 37.2
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 5.1e-07 58.5 46 65.2
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 5.1e-07 58.5 46 65.2
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.1e-07 58.5 122 45.1
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 5.1e-07 58.5 110 50.0
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 6.6e-07 58.2 156 34.0
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 8.6e-07 57.8 122 44.3
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.5e-06 57.0 136 47.8
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 2.5e-06 56.2 118 48.3
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.5e-06 56.2 127 36.2
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 3.3e-06 55.8 120 33.3
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 4.3e-06 55.5 117 47.9
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.6e-06 55.1 117 35.9
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 5.6e-06 55.1 116 31.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 5.6e-06 55.1 112 34.8


User provided reference genes

Program Settings