Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 2.2e-199 698.7 343 100.0
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 1.3e-148 530.0 366 74.6
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 8.1e-146 520.8 369 73.7
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 4.0e-145 518.5 367 73.8
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 3.4e-144 515.4 369 73.2
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 2.4e-129 466.1 354 67.5
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 3.1e-129 465.7 354 67.2
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 3.4e-128 462.2 366 65.0
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 1.9e-126 456.4 361 65.4
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 6.0e-125 451.4 353 66.6
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 6.0e-125 451.4 354 66.7
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 7.9e-125 451.1 368 63.6
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 1.0e-124 450.7 368 64.4
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 1.0e-124 450.7 355 65.9
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 1.3e-124 450.3 354 66.4
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 1.8e-124 449.9 362 64.4
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 2.3e-124 449.5 367 63.8
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 3.0e-124 449.1 347 66.9
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 5.1e-124 448.4 338 68.0
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 8.7e-124 447.6 366 63.1
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 3.3e-123 445.7 354 65.3
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 5.6e-123 444.9 347 66.9
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 1.3e-122 443.7 352 66.2
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 1.6e-122 443.4 356 66.0
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 3.1e-121 439.1 351 63.2
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 6.9e-121 438.0 359 62.7
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 1.2e-120 437.2 337 65.0
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 1.5e-120 436.8 363 63.6
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 7.6e-120 434.5 366 62.8
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 1.7e-119 433.3 348 63.2
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 4.9e-119 431.8 359 61.8
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 6.4e-119 431.4 350 66.0
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 8.4e-119 431.0 350 64.9
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 1.1e-118 430.6 351 61.5
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 1.1e-118 430.6 348 63.5
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 1.1e-118 430.6 380 59.5
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 1.9e-118 429.9 348 63.5
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 1.9e-118 429.9 347 64.6
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 4.2e-118 428.7 354 60.7
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 7.1e-118 427.9 348 63.5
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 1.6e-117 426.8 369 60.7
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 6.0e-117 424.9 359 61.6
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 6.0e-117 424.9 325 64.6
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.3e-116 423.7 367 59.7
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 1.8e-116 423.3 359 60.2
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 2.3e-116 422.9 351 63.5
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 3.9e-116 422.2 335 65.1
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 5.1e-116 421.8 357 59.9
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 6.7e-116 421.4 363 61.7
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.1e-115 420.6 346 62.1
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 1.5e-115 420.2 358 60.9
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.9e-115 419.9 368 58.4
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.5e-115 419.5 363 61.4
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 3.3e-115 419.1 341 61.9
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.3e-115 418.7 320 65.3
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 5.6e-115 418.3 344 63.7
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 7.4e-115 417.9 397 56.9
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 6.2e-114 414.8 358 60.3
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 6.2e-114 414.8 352 60.8
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 1.8e-113 413.3 359 58.5
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 3.1e-113 412.5 359 60.4
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 6.9e-113 411.4 357 60.5
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.9e-113 411.4 365 60.0
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 9.0e-113 411.0 340 61.8
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 2.0e-112 409.8 359 59.3
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 4.5e-112 408.7 349 60.5
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 4.5e-112 408.7 314 65.3
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 7.6e-112 407.9 352 60.8
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 7.6e-112 407.9 355 60.3
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 3.8e-111 405.6 374 58.8
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 3.8e-111 405.6 385 59.0
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 4.9e-111 405.2 355 60.0
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 4.9e-111 405.2 356 60.7
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 1.1e-110 404.1 355 59.4
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 3.2e-110 402.5 353 60.6
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 7.1e-110 401.4 326 61.7
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 9.3e-110 401.0 341 60.4
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 6.0e-109 398.3 383 55.4
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 1.0e-108 397.5 336 58.9
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 5.1e-108 395.2 320 61.9
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.5e-107 393.7 320 61.6
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.9e-107 393.3 368 56.5
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 2.5e-107 392.9 342 59.1
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 1.6e-106 390.2 357 57.1
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 2.6e-104 382.9 336 58.0
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 3.4e-104 382.5 324 61.1
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 7.7e-104 381.3 396 52.5
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 5.0e-103 378.6 341 59.5
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 1.4e-102 377.1 346 57.2
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 1.2e-101 374.0 359 54.3
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.8e-100 370.2 320 63.4
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 3.3e-99 365.9 340 55.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 9.7e-99 364.4 319 58.9
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.7e-98 363.6 367 56.4
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 1.5e-96 357.1 365 53.4
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 4.5e-96 355.5 351 54.4
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 5.9e-96 355.1 325 57.2
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 1.0e-95 354.4 363 53.4
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 1.4e-92 344.0 278 63.7
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 1.4e-92 344.0 298 60.7
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 4.4e-91 339.0 320 55.3
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 3.2e-86 322.8 310 54.8
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 7.2e-86 321.6 327 48.6
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 3.9e-84 315.8 368 49.2
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 2.0e-72 276.9 295 49.5
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 7.0e-65 251.9 264 53.0
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 3.5e-64 249.6 216 59.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.7e-58 230.7 202 57.9
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.2e-57 224.9 221 52.5
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.4e-50 202.2 118 77.1
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.1e-49 201.4 118 78.0
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.4e-49 201.1 119 76.5
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.6e-48 196.1 120 74.2
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.9e-46 190.7 142 67.6
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 7.5e-43 178.7 110 74.5
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.9e-41 174.1 137 60.6
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 2.3e-36 157.1 199 48.2
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.2e-35 154.8 92 77.2
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 1.5e-35 154.5 127 49.6
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 1.5e-35 154.5 173 48.0
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 5.8e-35 152.5 130 50.8
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 9.9e-35 151.8 103 68.0
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 1.4e-28 131.3 399 26.8
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 2.4e-28 130.6 75 77.3
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 3.4e-27 126.7 92 71.7
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.8e-26 123.2 76 76.3
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 6.4e-18 95.9 329 28.0
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 1.2e-16 91.7 70 68.6
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.1e-15 86.3 48 79.2
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.1e-15 86.3 48 79.2
MD12G1254600 Malus domestica HOM05D005821 ORTHO05D006649 1.1e-12 78.6 60 65.0
MD02G1103100 Malus domestica HOM05D005821 ORTHO05D006649 2.4e-12 77.4 60 65.0
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 4.0e-12 76.6 51 66.7
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.0e-12 76.6 78 51.3
Gohir.D08G112016 Gossypium hirsutum HOM05D005821 ORTHO05D047549 3.4e-11 73.6 65 64.6
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 4.5e-11 73.2 53 60.4
Gorai.004G120200 Gossypium raimondii HOM05D005821 ORTHO05D047549 3.8e-10 70.1 64 62.5
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 7.1e-09 65.9 46 60.9
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 2.3e-07 60.8 170 28.2
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 2.3e-07 60.8 131 32.1
MSTRG.5072 Avicennia marina HOM05D004444 ORTHO05D005246 3.9e-07 60.1 159 30.8
Oeu013089.1 Olea europaea HOM05D004444 ORTHO05D005246 8.7e-07 58.9 158 27.8
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.9e-06 57.8 30 80.0
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 1.9e-06 57.8 158 27.8
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 3.3e-06 57.0 126 29.4
CANSAT78G1818 Cannabis sativa HOM05D004444 ORTHO05D005246 4.3e-06 56.6 128 28.1
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 4.3e-06 56.6 158 27.2
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 5.6e-06 56.2 160 30.0
ECA248G3474 Erigeron canadensis HOM05D004444 ORTHO05D005246 9.6e-06 55.5 137 28.5


User provided reference genes

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