Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 5.1e-152 541.2 303 100.0
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-144 516.5 303 90.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.8e-144 516.2 303 90.8
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 5.7e-143 511.1 303 90.1
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.0e-132 476.1 292 86.6
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 5.0e-131 471.5 301 82.1
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.5e-127 459.9 301 84.7
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 2.2e-126 456.1 302 83.8
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.3e-123 446.8 303 77.6
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.7e-123 446.4 300 83.3
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.5e-123 444.5 301 77.4
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 8.5e-123 444.1 301 79.1
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 3.2e-122 442.2 303 77.9
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 7.2e-122 441.0 302 82.1
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 9.4e-122 440.7 300 78.7
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 9.4e-122 440.7 301 78.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 2.1e-121 439.5 303 77.2
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.1e-121 439.5 303 75.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 4.7e-121 438.3 303 82.5
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 4.7e-121 438.3 303 75.6
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 4.7e-121 438.3 303 80.5
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 6.1e-121 438.0 300 81.7
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 7.9e-121 437.6 303 77.6
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 7.9e-121 437.6 303 77.6
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 7.9e-121 437.6 302 77.5
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.8e-120 436.4 303 75.6
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 3.9e-120 435.3 303 76.2
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 8.8e-120 434.1 298 76.2
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 8.8e-120 434.1 303 81.2
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.1e-119 433.7 303 79.2
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.1e-119 433.7 298 77.9
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.1e-119 433.7 298 78.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.1e-119 433.7 303 80.5
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.5e-119 433.3 303 79.5
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.0e-119 433.0 298 77.2
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 7.4e-119 431.0 302 76.5
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 9.7e-119 430.6 303 78.9
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.7e-118 429.9 301 77.1
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.8e-118 429.1 298 75.5
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.8e-118 429.1 303 74.9
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 3.7e-118 428.7 301 76.4
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 8.2e-118 427.6 303 73.9
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.2e-118 427.6 301 76.1
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 8.2e-118 427.6 303 81.2
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.1e-117 427.2 306 78.4
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.1e-117 427.2 303 77.9
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-117 427.2 303 75.6
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.4e-117 426.8 292 82.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.8e-117 426.4 303 73.3
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 2.4e-117 426.0 302 79.1
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.1e-117 425.6 299 76.9
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 7.0e-117 424.5 301 79.7
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.2e-116 423.7 304 78.9
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.2e-116 423.7 303 73.3
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.2e-116 423.7 299 75.9
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-116 423.3 304 78.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.6e-116 423.3 304 78.6
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.6e-116 422.5 303 79.5
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.6e-116 422.5 299 75.9
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 4.5e-116 421.8 303 79.9
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 5.9e-116 421.4 303 78.9
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 7.7e-116 421.0 303 77.9
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.0e-115 420.6 303 78.9
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.3e-115 420.2 303 77.2
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.7e-115 419.9 291 75.9
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.2e-115 419.5 302 76.8
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 2.2e-115 419.5 302 78.1
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 2.9e-115 419.1 298 78.5
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 5.0e-115 418.3 305 79.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.9e-114 416.4 298 78.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 4.2e-114 415.2 300 74.0
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.2e-114 415.2 310 77.7
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 5.5e-114 414.8 303 77.6
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 5.5e-114 414.8 310 78.1
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.2e-114 414.5 299 73.6
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.2e-113 413.7 299 73.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.6e-113 413.3 303 74.6
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.7e-113 412.5 292 81.2
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.7e-113 412.5 293 80.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.6e-113 412.1 292 78.8
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 4.7e-113 411.8 291 75.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.0e-112 410.6 298 73.5
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.0e-112 409.1 301 76.7
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.0e-112 409.1 301 78.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 8.8e-112 407.5 304 77.3
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 4.4e-111 405.2 244 87.7
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.7e-111 404.8 302 75.5
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 5.7e-111 404.8 299 74.9
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.7e-110 403.3 299 72.6
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 2.2e-110 402.9 301 73.1
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.4e-109 400.2 302 74.5
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.4e-109 400.2 302 75.5
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.4e-109 400.2 301 71.1
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 2.4e-109 399.4 292 77.7
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-108 397.1 298 76.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.6e-108 396.7 298 71.8
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.5e-108 395.2 300 74.0
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.0e-107 394.0 301 69.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.0e-107 394.0 300 70.7
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.0e-107 391.7 315 69.5
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 6.5e-107 391.3 294 77.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 6.5e-107 391.3 310 70.0
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.2e-106 389.0 298 76.5
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 4.2e-106 388.7 300 73.3
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 5.5e-106 388.3 292 77.1
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.2e-105 387.1 300 74.7
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 2.1e-105 386.3 292 77.4
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 6.1e-105 384.8 293 71.0
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 3.0e-104 382.5 301 69.4
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 5.7e-103 378.3 286 72.7
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 7.0e-101 371.3 299 73.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 7.7e-100 367.9 292 69.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.8e-99 365.5 301 66.1
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 5.6e-90 335.1 301 62.1
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 5.2e-88 328.6 240 72.9
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.5e-84 315.8 306 60.8
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.6e-84 315.5 301 60.1
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.3e-83 313.9 296 64.2
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 6.6e-83 311.6 208 77.9
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 8.1e-73 278.1 299 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.1e-72 276.2 299 59.5
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.9e-70 269.6 218 73.4
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 6.2e-65 251.9 240 64.6
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 8.1e-65 251.5 243 61.7
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.8e-64 250.4 293 57.0
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.9e-61 240.4 286 53.1
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 1.1e-58 231.1 299 53.8
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.1e-52 210.3 197 61.4
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 3.3e-50 203.0 316 44.3
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.0e-48 196.1 251 50.2
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 5.6e-42 175.6 322 40.1
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 6.2e-41 172.2 290 39.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.1e-40 171.4 299 43.1
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.5e-39 167.5 128 68.0
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.3e-38 164.5 129 66.7
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.7e-36 156.8 126 63.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.3e-32 142.5 302 35.8
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.0e-27 128.3 128 55.5
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.3e-27 127.1 85 76.5
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.9e-26 124.0 207 38.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 4.3e-26 122.9 212 40.1
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 5.7e-26 122.5 94 68.1
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 9.0e-24 115.2 164 46.3
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 9.0e-24 115.2 164 46.3
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 9.0e-24 115.2 164 46.3
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 9.0e-24 115.2 163 45.4
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.5e-23 114.4 66 86.4
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.4e-21 107.8 60 88.3
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.6e-20 104.4 72 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.1e-20 104.0 180 42.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 8.2e-17 92.0 82 63.4
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.4e-16 91.3 71 67.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 2.4e-16 90.5 71 67.6
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 5.3e-16 89.4 80 58.8
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.5e-10 71.2 112 41.1
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.1e-08 65.1 95 43.2
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.4e-08 64.7 40 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.3e-06 58.2 59 57.6


User provided reference genes

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