Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.2e-131 472.2 230 100.0
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.4e-117 426.4 230 89.6
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.6e-113 412.9 230 87.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-113 411.8 230 87.4
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.5e-111 405.6 230 85.2
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.4e-108 395.2 247 81.4
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.2e-106 388.3 232 80.6
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 5.5e-106 387.9 232 81.5
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 9.4e-106 387.1 232 81.5
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.6e-105 386.3 226 81.4
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.6e-105 386.3 226 81.4
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 4.6e-105 384.8 233 82.8
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 9.7e-103 377.1 229 78.2
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.3e-102 376.7 233 79.8
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.7e-102 376.3 234 79.1
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.2e-102 375.9 226 80.1
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 8.2e-102 374.0 234 79.1
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.8e-101 372.9 226 79.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.8e-101 372.9 226 80.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 4.1e-101 371.7 234 78.6
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.3e-101 371.3 230 80.4
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 6.9e-101 370.9 233 78.5
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 9.1e-101 370.5 228 78.9
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.0e-100 369.4 226 77.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.0e-100 369.4 226 77.9
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.0e-100 369.4 231 78.8
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.6e-100 369.0 230 78.3
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-100 368.6 234 79.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 5.9e-100 367.9 232 77.6
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.9e-100 367.9 233 77.3
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 5.9e-100 367.9 226 77.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.0e-99 367.1 234 78.2
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.9e-99 365.5 230 77.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.9e-99 365.5 233 77.7
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 3.8e-99 365.2 225 76.9
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.8e-99 365.2 228 78.9
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 6.5e-99 364.4 231 77.1
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-98 363.6 232 77.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 3.2e-98 362.1 225 77.3
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 4.2e-98 361.7 255 72.9
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 5.5e-98 361.3 226 77.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 9.4e-98 360.5 232 77.2
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 9.4e-98 360.5 231 76.6
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 9.4e-98 360.5 233 76.8
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.6e-97 359.8 232 76.3
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 2.7e-97 359.0 232 76.7
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.6e-97 358.6 233 76.4
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.9e-97 357.5 232 75.9
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.4e-96 356.7 233 76.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.0e-96 355.5 249 73.1
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.9e-96 355.1 249 73.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.9e-96 355.1 232 77.2
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 5.1e-96 354.8 225 75.6
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 8.8e-96 354.0 235 73.6
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.6e-95 352.4 231 74.5
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 4.4e-95 351.7 233 75.5
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.4e-95 350.9 218 78.0
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.7e-94 349.7 226 76.5
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.7e-94 349.7 233 74.2
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.2e-94 349.4 232 75.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.2e-94 349.4 230 74.8
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.2e-94 349.4 230 74.8
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.8e-94 349.0 234 75.6
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.8e-94 349.0 234 75.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.3e-94 347.8 232 75.0
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.8e-93 346.3 231 73.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.8e-93 346.3 232 74.6
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.4e-93 345.9 237 74.3
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.1e-93 345.1 232 74.6
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.0e-93 344.4 232 73.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 9.1e-93 344.0 234 73.9
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.5e-92 342.0 232 73.7
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 3.5e-92 342.0 230 74.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.9e-92 341.3 234 73.9
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.7e-92 340.9 230 75.2
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-91 340.1 232 73.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.7e-91 339.7 230 73.9
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.9e-91 339.0 229 70.3
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.9e-91 339.0 212 74.5
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 3.8e-91 338.6 233 72.1
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 8.5e-91 337.4 214 76.6
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 5.5e-90 334.7 230 70.4
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 5.5e-90 334.7 212 74.1
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 5.5e-90 334.7 230 72.6
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 7.2e-90 334.3 237 70.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 9.4e-90 334.0 230 70.0
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 9.4e-90 334.0 230 70.0
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.4e-90 334.0 233 69.1
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 9.4e-90 334.0 233 70.0
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.1e-89 332.8 233 70.0
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.7e-89 331.6 223 71.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 6.1e-89 331.3 229 70.7
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 8.0e-89 330.9 234 69.7
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 8.0e-89 330.9 232 71.6
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.0e-88 330.5 217 75.6
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.4e-88 330.1 232 72.8
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.4e-88 330.1 226 72.1
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.8e-88 329.7 221 70.6
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.0e-88 328.9 223 70.9
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.0e-88 328.9 234 70.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.5e-87 326.6 234 71.8
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.0e-87 326.2 231 69.7
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.6e-87 325.9 223 70.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.6e-87 325.9 223 70.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 5.7e-87 324.7 238 68.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.7e-87 324.7 235 70.2
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.7e-87 324.7 235 70.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 5.7e-87 324.7 227 71.8
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 7.4e-87 324.3 230 67.8
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 7.4e-87 324.3 223 70.0
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 9.7e-87 323.9 231 68.8
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.3e-86 323.6 230 67.8
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 3.7e-86 322.0 233 68.7
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 4.8e-86 321.6 234 66.7
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.2e-84 317.0 274 60.2
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 7.7e-84 314.3 232 69.4
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.7e-83 313.2 236 69.5
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 6.5e-83 311.2 238 66.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.2e-81 307.0 234 66.2
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 8.0e-81 304.3 242 65.3
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.4e-77 293.5 237 65.4
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.3e-77 291.6 207 72.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.0e-77 291.2 161 86.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.2e-76 290.4 242 62.8
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 7.7e-76 287.7 185 77.3
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.8e-75 285.4 232 64.2
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 7.2e-74 281.2 179 76.0
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.3e-70 270.4 236 62.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.6e-68 263.5 247 54.7
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.7e-67 260.0 215 56.3
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 4.2e-66 255.4 219 62.1
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 6.8e-64 248.1 158 75.3
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.8e-62 242.7 193 66.3
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 5.0e-59 231.9 157 70.1
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 3.6e-57 225.7 182 64.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.1e-56 222.6 184 62.0
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.6e-55 219.5 145 77.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 3.4e-55 219.2 223 49.8
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 6.4e-54 214.9 229 49.8
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.6e-52 210.3 226 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 7.8e-52 208.0 226 52.2
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.6e-49 199.1 167 61.1
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.7e-46 190.3 120 73.3
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.8e-40 170.2 214 45.8
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.8e-40 170.2 124 62.9
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 6.0e-36 155.2 92 81.5
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.5e-34 150.6 225 43.6
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-34 150.6 156 52.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.9e-34 150.2 99 68.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 8.9e-32 141.4 209 41.6
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 4.4e-31 139.0 152 47.4
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.5e-26 124.0 102 62.7
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.6e-23 111.7 80 73.8
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.2e-22 110.2 200 32.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.9e-22 109.8 75 78.7
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 2.4e-21 106.7 88 58.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.2e-21 106.3 70 75.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.1e-21 105.1 76 75.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-20 104.0 75 76.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.7e-20 103.2 76 73.7
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.6e-18 95.5 66 72.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 7.3e-18 95.1 122 43.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.2e-17 92.0 72 66.7
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 2.0e-15 87.0 225 31.1
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.8e-15 85.5 59 72.9
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.5e-12 76.3 53 81.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.8e-11 73.9 51 80.4
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 1.4e-08 64.3 144 32.6
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 3.1e-08 63.2 55 65.5
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.3e-08 62.4 53 64.2
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.4e-07 59.7 38 68.4


User provided reference genes

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