Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 0.0e+00 1315.4 693 100.0
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 0.0e+00 1167.1 693 87.6
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 0.0e+00 1159.4 693 87.0
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 0.0e+00 1146.3 693 87.2
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 0.0e+00 1132.5 693 84.8
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 0.0e+00 1131.7 693 84.7
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 0.0e+00 1121.7 693 84.3
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 0.0e+00 1092.4 693 82.3
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 0.0e+00 1092.0 693 82.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 0.0e+00 1083.2 693 82.1
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 2.1e-294 1015.4 712 73.6
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 8.9e-293 1010.0 693 74.0
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.1e-290 1003.0 693 73.7
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.4e-290 1001.9 693 74.0
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 2.7e-289 998.4 693 73.9
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.3e-288 996.1 689 73.6
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 5.8e-284 980.7 688 73.7
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 1.4e-282 976.1 698 71.8
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 3.2e-282 974.9 691 71.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 7.0e-282 973.8 695 72.7
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 6.0e-281 970.7 691 72.2
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.1e-279 966.5 696 71.8
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 4.3e-279 964.5 698 70.9
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 1.1e-277 959.9 626 80.7
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 5.2e-277 957.6 695 71.2
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 2.0e-276 955.7 693 70.7
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 6.4e-275 950.7 696 71.0
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 6.4e-275 950.7 694 70.9
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.9e-274 949.1 696 70.5
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 5.4e-274 947.6 688 71.5
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 2.1e-273 945.7 689 72.0
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-272 943.3 686 70.8
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 3.0e-272 941.8 697 70.2
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 8.6e-272 940.3 694 70.9
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.5e-271 938.7 693 68.8
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 2.5e-271 938.7 719 68.6
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 4.3e-271 937.9 691 71.1
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 3.6e-270 934.9 728 68.4
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 6.2e-270 934.1 693 68.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 8.1e-270 933.7 696 70.8
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 2.4e-269 932.2 691 70.3
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 2.9e-267 925.2 693 69.3
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 3.2e-266 921.8 693 67.4
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.0e-265 917.5 712 67.7
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 7.8e-265 917.1 693 68.3
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.0e-264 916.8 712 68.4
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.0e-264 916.8 695 68.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.9e-263 912.5 690 68.6
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.8e-262 908.7 693 68.0
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.7e-262 907.9 693 68.0
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.8e-260 901.0 745 65.0
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 5.8e-260 901.0 687 68.3
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.7e-259 899.4 694 67.1
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 4.9e-259 897.9 687 68.1
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 4.9e-259 897.9 693 66.5
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 3.2e-258 895.2 686 67.8
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 7.1e-258 894.0 707 65.8
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.5e-257 891.7 646 71.4
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 7.8e-257 890.6 707 65.5
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.7e-256 889.4 686 67.1
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.9e-255 885.9 693 66.4
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 2.1e-254 882.5 686 66.3
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 3.6e-254 881.7 686 66.5
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 4.8e-254 881.3 689 66.8
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 4.8e-254 881.3 689 67.3
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 6.2e-254 880.9 684 66.2
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.4e-253 879.8 686 67.1
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 1.8e-253 879.4 695 66.0
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.8e-253 879.4 687 66.5
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 3.1e-253 878.6 685 67.3
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 5.8e-252 874.4 680 65.0
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 9.9e-252 873.6 690 66.4
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 9.9e-252 873.6 693 65.9
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 2.9e-251 872.1 686 66.0
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 6.4e-251 870.9 662 68.7
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.1e-250 870.2 693 65.5
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.4e-250 869.8 693 65.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 4.2e-250 868.2 678 66.5
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 7.1e-250 867.5 690 65.7
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 7.9e-249 864.0 695 64.6
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.8e-248 862.8 712 62.2
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 8.7e-248 860.5 695 63.6
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 1.1e-247 860.1 693 65.1
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 1.5e-247 859.8 693 65.1
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.5e-247 859.0 683 65.7
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 2.5e-247 859.0 693 64.9
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 2.8e-246 855.5 694 64.4
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 8.1e-246 854.0 710 64.1
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.8e-245 852.8 687 64.3
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.8e-245 852.8 683 65.4
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 6.9e-245 850.9 797 57.6
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.4e-244 848.6 688 64.1
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.5e-242 842.4 646 67.3
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.2e-242 842.0 723 61.5
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.3e-242 840.5 687 64.0
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.2e-241 840.1 608 71.2
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 1.0e-240 837.0 693 63.6
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 6.7e-240 834.3 708 62.3
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.6e-238 829.7 645 66.5
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 2.0e-236 822.8 655 65.2
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 3.4e-236 822.0 676 62.3
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.0e-235 820.5 654 64.8
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.0e-235 820.5 645 64.3
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.7e-235 819.7 687 63.2
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 6.5e-235 817.8 655 64.7
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.4e-234 816.6 693 62.2
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 3.2e-234 815.5 712 61.2
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 7.1e-234 814.3 694 62.1
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 9.3e-234 813.9 697 62.3
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.2e-233 813.5 687 60.8
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 2.7e-233 812.4 640 63.4
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.0e-232 810.4 800 56.4
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.1e-231 807.0 694 61.7
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 4.3e-231 805.1 687 60.8
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-230 803.5 663 63.7
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.3e-230 803.5 663 63.7
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 3.7e-230 802.0 710 60.3
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.1e-229 800.4 661 63.5
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.8e-229 799.7 645 63.7
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.5e-228 795.0 696 62.5
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 6.5e-227 791.2 644 65.1
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 5.5e-226 788.1 614 66.9
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 1.4e-224 783.5 621 65.5
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 3.0e-224 782.3 697 59.3
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 1.1e-221 773.9 695 59.9
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.4e-221 772.7 685 59.4
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 4.1e-221 771.9 686 58.9
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 5.0e-219 765.0 696 59.6
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.9e-218 763.1 673 61.2
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.1e-213 747.3 677 59.8
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 5.9e-212 741.5 728 57.7
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 8.8e-208 727.6 691 55.9
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 3.7e-206 722.2 745 55.4
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 9.1e-205 717.6 709 54.9
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.2e-194 682.2 647 58.7
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 9.4e-194 681.0 696 56.0
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 3.0e-192 676.0 652 56.3
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 2.0e-180 636.7 550 63.3
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 4.0e-176 622.5 530 61.1
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.2e-152 542.3 503 58.1
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.9e-143 511.5 564 52.8
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 8.7e-139 498.4 432 62.3
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.5e-138 496.9 699 42.6
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.9e-123 446.4 352 65.6
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 3.8e-110 403.3 425 52.7
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 5.5e-109 399.4 361 57.3
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.3e-105 388.3 320 64.1
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 6.3e-105 386.0 308 64.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.0e-102 376.3 327 61.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.8e-99 367.9 522 43.5
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 5.7e-98 362.8 377 55.4
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 8.0e-92 342.4 307 57.0
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 5.9e-79 299.7 415 44.6
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 7.5e-66 256.1 651 32.7
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.2e-64 250.8 309 48.9
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.1e-60 238.0 385 40.5
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 2.6e-58 231.1 299 44.1
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.4e-56 225.3 156 74.4
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-52 211.5 263 49.4
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 8.3e-49 199.5 654 26.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.3e-45 187.6 187 53.5
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.8e-43 181.8 230 46.5
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.9e-41 174.5 199 48.7
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 2.7e-39 167.9 192 50.5
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-37 161.8 118 69.5
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.6e-34 149.8 161 52.2
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.2e-31 142.5 135 54.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 3.9e-30 137.5 96 67.7
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.3e-29 134.4 195 44.1
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-27 128.3 79 78.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 9.0e-27 126.3 80 76.2
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-26 125.9 88 68.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-26 125.9 131 55.0
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 3.0e-22 111.3 300 33.3
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 9.9e-18 96.3 67 68.7
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 2.9e-17 94.7 107 47.7
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 9.3e-16 89.7 171 37.4
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 2.3e-14 85.1 86 54.7
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.3e-13 81.3 115 40.0
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.4e-11 75.9 46 80.4
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.1e-11 74.7 118 40.7
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 1.5e-10 72.4 179 32.4
arahy.Tifrunner.gnm1.ann1.TWLQ99 Arachis hypogaea HOM05D003718 ORTHO05D085526 3.0e-06 58.2 71 49.3


User provided reference genes

Program Settings