Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 0.0e+00 1940.6 1020 100.0
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 0.0e+00 1632.8 1028 84.7
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 0.0e+00 1497.6 1026 79.9
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 0.0e+00 1486.1 1028 79.8
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 0.0e+00 1469.9 1026 78.7
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 0.0e+00 1384.8 948 79.6
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 0.0e+00 1151.0 1031 62.9
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 0.0e+00 1144.8 1037 63.1
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.1e-306 1055.8 1150 55.3
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.7e-306 1055.4 1138 55.9
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 3.8e-300 1035.0 1051 58.6
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 4.3e-296 1021.5 1077 57.4
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 7.4e-296 1020.8 1032 58.3
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 5.9e-293 1011.1 1079 56.7
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 3.8e-292 1008.4 1149 54.2
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 1.6e-290 1003.0 1045 57.0
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 1.7e-279 966.5 1053 55.9
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 3.1e-278 962.2 1051 55.7
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 1.6e-274 949.9 1118 54.0
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.3e-273 946.0 1064 55.4
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 8.2e-271 937.6 1095 53.6
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 1.1e-270 937.2 1055 55.1
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 5.0e-268 928.3 1071 54.9
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 4.2e-267 925.2 1114 52.2
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 5.5e-267 924.9 1089 52.4
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 1.0e-265 920.6 1123 51.6
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 1.2e-264 917.1 1072 53.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 2.0e-264 916.4 1088 52.8
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 2.7e-261 906.0 1042 53.9
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 1.0e-260 904.0 1054 53.3
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 1.0e-260 904.0 1044 52.8
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 5.5e-259 898.3 1054 52.6
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 9.1e-254 880.9 1120 50.4
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 2.0e-253 879.8 1069 51.6
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 1.0e-252 877.5 1129 50.2
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 3.3e-251 872.5 1055 51.5
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 1.3e-244 850.5 1058 51.0
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 1.1e-243 847.4 1039 51.4
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 5.4e-238 828.6 1154 48.1
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 5.4e-238 828.6 1119 48.9
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 9.5e-235 817.8 1131 48.9
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 5.2e-233 812.0 1136 48.2
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.5e-232 810.4 1132 47.7
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.5e-232 810.4 1043 49.8
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 7.5e-232 808.1 1094 48.0
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 8.3e-231 804.7 1052 49.1
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 4.9e-223 778.9 1073 48.2
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 4.3e-219 765.8 1040 48.0
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 9.6e-219 764.6 1020 48.2
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.5e-216 757.3 1034 48.5
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 1.7e-215 753.8 1020 48.3
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.7e-215 753.8 740 59.7
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 3.9e-212 742.7 612 67.6
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 1.1e-211 741.1 1081 46.8
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.6e-211 738.8 1071 46.9
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 1.3e-210 737.6 1027 48.4
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 3.6e-210 736.1 1062 46.2
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 2.4e-209 733.4 1066 47.2
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 3.4e-208 729.6 969 50.6
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 2.4e-206 723.4 1160 43.1
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 3.2e-206 723.0 1093 44.4
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 3.2e-206 723.0 1093 44.7
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 5.4e-206 722.2 1103 46.9
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 7.9e-205 718.4 1091 45.0
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 3.6e-202 709.5 1049 45.1
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 3.4e-200 703.0 1174 44.4
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 3.4e-200 703.0 1081 45.1
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 5.8e-200 702.2 1071 45.0
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 7.6e-200 701.8 1077 45.1
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 1.3e-199 701.0 830 51.9
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 3.8e-199 699.5 1078 44.3
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 1.9e-198 697.2 727 58.0
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 6.0e-197 692.2 1051 45.4
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 6.7e-196 688.7 844 51.8
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 4.8e-194 682.6 851 51.2
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 4.8e-194 682.6 851 51.2
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 1.4e-193 681.0 1114 42.4
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 4.0e-193 679.5 843 51.2
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 4.0e-193 679.5 843 51.2
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 1.4e-190 671.0 1056 43.5
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 9.3e-190 668.3 802 51.1
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 3.9e-188 662.9 836 49.6
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 1.2e-184 651.4 798 50.4
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 3.4e-184 649.8 1039 44.1
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 7.6e-184 648.7 1082 44.0
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 2.5e-179 633.6 906 45.4
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 1.3e-178 631.3 534 64.8
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 4.5e-176 622.9 1040 41.8
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 3.0e-172 610.1 900 45.1
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 6.7e-172 609.0 684 55.3
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.5e-171 607.8 680 52.6
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 1.5e-168 597.8 852 46.6
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 3.8e-167 593.2 1198 38.0
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 4.2e-166 589.7 741 51.8
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 2.0e-160 570.9 843 46.3
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 1.6e-157 561.2 526 61.0
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 1.3e-154 551.6 732 47.1
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 9.8e-147 525.4 962 40.1
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 3.4e-139 500.4 835 41.7
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 2.0e-136 491.1 1023 37.1
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.5e-134 485.0 399 66.2
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 9.2e-129 465.7 512 52.7
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.6e-128 464.9 609 48.8
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 1.5e-123 448.4 747 42.8
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 1.0e-119 435.6 423 57.9
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 8.9e-100 369.4 287 66.2
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.1e-92 344.4 315 61.3
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.0e-87 327.8 371 56.1
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 2.5e-78 298.1 333 51.4
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 8.7e-71 273.1 203 67.5
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 2.2e-66 258.5 511 38.9
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 7.9e-64 250.0 535 37.9
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.1e-63 247.3 360 47.2
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 3.3e-62 244.6 504 39.5
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 2.2e-53 215.3 170 70.0
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 7.4e-46 190.3 545 31.2
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.5e-43 181.0 141 65.2
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 3.0e-39 168.3 184 53.8
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 3.7e-37 161.4 1162 23.9
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 1.3e-34 152.9 219 47.5
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 6.3e-29 134.0 339 35.1
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 8.6e-26 123.6 220 35.0
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 1.6e-24 119.4 435 27.8
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.2e-23 114.4 83 66.3
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.9e-21 107.8 86 61.6
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.2e-19 103.2 76 68.4
arahy.Tifrunner.gnm1.ann1.6G1AZV Arachis hypogaea HOM05D002567 ORTHO05D006538 2.7e-19 102.1 321 33.3
Actinidia00674 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.5e-17 95.5 347 30.3
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.5e-17 95.5 65 70.8
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.0e-15 90.1 52 84.6
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.8e-15 89.4 97 58.8
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 3.4e-14 85.1 76 55.3
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 2.9e-13 82.0 210 31.9
Actinidia32250 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.6e-11 76.3 347 27.4
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 8.6e-10 70.5 249 29.7
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.9e-09 69.3 69 49.3
TAR399G0001 Trochodendron aralioides HOM05D060820 ORTHO05D006538 3.3e-09 68.6 223 34.5
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 4.3e-09 68.2 111 36.9
RcHm_v2.0_Chr2g0170231 Rosa chinensis HOM05D002567 ORTHO05D006538 1.2e-08 66.6 48 62.5
Actinidia32248 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.4e-07 63.2 50 72.0
MBI19_g13121_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.4e-07 63.2 380 27.6
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 5.2e-07 61.2 204 30.9
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 5.2e-07 61.2 90 40.0
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 6.8e-07 60.8 72 45.8
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 2.6e-06 58.9 85 41.2
COL.COLO4_21931 Corchorus olitorius HOM05D002848 ORTHO05D003043 2.6e-06 58.9 119 35.3
Solyc09g074700.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.6e-06 58.9 53 56.6
AagrBONN_evm.TU.Sc2ySwM_362.1398 Anthoceros agrestis HOM05D002848 ORTHO05D003043 4.4e-06 58.2 82 37.8


User provided reference genes

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