Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 1.2e-177 627.9 313 100.0
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 4.9e-126 456.4 313 73.2
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 3.1e-96 357.5 322 59.0
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 1.2e-92 345.5 324 58.3
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 4.6e-92 343.6 277 64.6
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 1.5e-90 338.6 284 62.0
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.4e-88 332.0 316 56.6
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 1.8e-88 331.6 263 65.0
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 9.0e-88 329.3 322 56.5
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.2e-87 328.9 254 66.9
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 1.3e-86 325.5 283 60.8
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 1.7e-86 325.1 305 57.0
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 7.2e-85 319.7 284 58.8
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 1.6e-84 318.5 313 55.0
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 1.9e-82 311.6 313 53.4
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 2.5e-82 311.2 309 54.4
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 2.5e-82 311.2 312 53.8
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 2.4e-80 304.7 282 57.8
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 3.1e-80 304.3 184 79.3
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 4.1e-80 303.9 319 53.6
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 5.9e-79 300.1 311 53.7
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 7.7e-79 299.7 269 58.0
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 2.9e-78 297.7 323 52.9
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 5.5e-77 293.5 311 51.1
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 5.5e-77 293.5 311 51.1
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 3.6e-76 290.8 251 61.0
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 6.1e-76 290.0 251 58.6
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 1.8e-75 288.5 306 51.3
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 3.9e-75 287.3 258 57.8
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 2.0e-74 285.0 260 57.3
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 2.8e-73 281.2 275 54.9
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 3.7e-73 280.8 261 56.7
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 1.1e-72 279.3 297 48.5
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.4e-72 278.9 257 54.5
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 6.9e-72 276.6 283 54.4
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 2.0e-71 275.0 251 58.2
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 1.0e-70 272.7 184 71.7
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 2.9e-70 271.2 255 56.1
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 1.8e-67 261.9 259 54.1
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 3.0e-67 261.2 184 66.8
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 5.1e-67 260.4 175 73.7
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 6.7e-67 260.0 184 69.0
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 2.0e-66 258.5 205 61.5
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 3.7e-65 254.2 282 51.1
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 1.8e-64 251.9 258 53.5
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 3.1e-64 251.1 184 63.6
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 3.1e-64 251.1 313 46.6
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 3.1e-64 251.1 184 67.9
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 5.3e-64 250.4 184 64.7
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 7.0e-64 250.0 255 51.8
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 5.9e-63 246.9 252 53.6
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.1e-61 242.7 312 46.2
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 4.2e-61 240.7 179 64.8
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 5.5e-61 240.4 174 64.9
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 7.2e-61 240.0 275 49.5
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 1.2e-60 239.2 184 63.0
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 1.5e-58 232.3 272 49.6
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 3.3e-58 231.1 180 61.1
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 7.5e-58 229.9 181 63.0
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 7.5e-58 229.9 181 63.0
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 1.3e-57 229.2 246 48.8
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 1.7e-57 228.8 279 47.0
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 2.8e-57 228.0 170 64.7
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 2.8e-57 228.0 272 47.8
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 1.0e-54 219.5 174 63.2
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 5.0e-54 217.2 265 46.8
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 8.5e-54 216.5 235 55.3
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 1.1e-53 216.1 184 57.1
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 3.6e-52 211.1 117 85.5
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 2.3e-51 208.4 210 58.6
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 2.0e-50 205.3 117 82.9
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 3.4e-50 204.5 191 55.0
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 2.2e-49 201.8 212 49.5
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 3.1e-48 198.0 248 47.6
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 1.6e-47 195.7 210 50.0
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 9.4e-45 186.4 141 66.0
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 2.1e-44 185.3 146 59.6
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 2.9e-38 164.9 149 53.7
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 5.0e-38 164.1 91 84.6
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 2.5e-37 161.8 125 64.0
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 1.5e-34 152.5 107 69.2
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 4.9e-33 147.5 148 52.7
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 7.0e-32 143.7 91 73.6
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 5.2e-27 127.5 90 65.6
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 3.7e-25 121.3 116 51.7
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 7.0e-24 117.1 173 41.6
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 3.3e-21 108.2 78 62.8
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 6.4e-17 94.0 81 51.9
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 2.7e-15 88.6 79 50.6
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 4.6e-15 87.8 161 35.4
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 4.6e-15 87.8 81 49.4
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 7.8e-15 87.0 81 48.1
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 8.6e-14 83.6 180 28.9
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 2.5e-13 82.0 81 46.9
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 9.5e-13 80.1 208 27.9
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 1.6e-12 79.3 165 28.5
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 4.0e-11 74.7 216 26.9
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.8e-10 70.9 198 26.8
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 5.8e-10 70.9 157 27.4
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 7.6e-10 70.5 54 63.0
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 9.9e-10 70.1 198 25.8
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 1.7e-09 69.3 161 26.1
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 4.9e-09 67.8 140 24.3
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 6.4e-09 67.4 178 27.0
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 8.4e-09 67.0 158 27.8
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 8.4e-09 67.0 206 23.3
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 1.4e-08 66.2 197 26.9
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 1.9e-08 65.9 165 27.3
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 2.4e-08 65.5 146 26.0
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 4.1e-08 64.7 195 26.7
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 5.4e-08 64.3 159 24.5
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 7.1e-08 63.9 164 27.4
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 7.1e-08 63.9 164 27.4
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 7.1e-08 63.9 194 24.7
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 7.1e-08 63.9 270 22.2
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 7.1e-08 63.9 144 25.7
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 9.2e-08 63.5 210 24.3
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 9.2e-08 63.5 144 25.7
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 1.2e-07 63.2 221 25.8
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.6e-07 62.8 206 24.3
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 1.6e-07 62.8 142 26.8
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 1.6e-07 62.8 149 26.2
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 2.1e-07 62.4 180 26.1
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 2.1e-07 62.4 164 26.8
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 2.7e-07 62.0 167 27.5
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.7e-07 62.0 270 22.2
PSO541G5427 Papaver somniferum HOM05D007063 ORTHO05D008822 3.5e-07 61.6 210 26.2
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 3.5e-07 61.6 259 22.8
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 4.6e-07 61.2 187 27.3
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 4.6e-07 61.2 156 26.3
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.6e-07 61.2 266 24.4
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 6.0e-07 60.8 172 25.6
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 6.0e-07 60.8 142 24.6
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 6.0e-07 60.8 187 23.5
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 7.8e-07 60.5 147 26.5
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 7.8e-07 60.5 100 34.0
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 7.8e-07 60.5 171 26.3
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 7.8e-07 60.5 243 23.9
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 1.0e-06 60.1 208 27.4
ECA236G0534 Erigeron canadensis HOM05D002890 ORTHO05D009847 1.0e-06 60.1 143 23.8
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.3e-06 59.7 159 25.8
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 1.3e-06 59.7 192 24.0
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 1.7e-06 59.3 166 24.1
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 1.7e-06 59.3 173 23.1
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.7e-06 59.3 217 21.7
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 1.7e-06 59.3 96 33.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.7e-06 59.3 101 31.7
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 2.3e-06 58.9 183 23.5
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 2.3e-06 58.9 217 22.6
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 3.0e-06 58.5 144 25.0
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 3.0e-06 58.5 176 23.3
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 3.0e-06 58.5 86 32.6
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 3.0e-06 58.5 73 39.7
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 3.9e-06 58.2 226 23.5
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 3.9e-06 58.2 101 31.7
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 3.9e-06 58.2 154 22.1
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.1e-06 57.8 170 25.9
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 5.1e-06 57.8 173 25.4
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 5.1e-06 57.8 107 29.9
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 5.1e-06 57.8 264 25.0
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.1e-06 57.8 277 21.3
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 6.6e-06 57.4 108 29.6
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 6.6e-06 57.4 172 23.3
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 6.6e-06 57.4 192 24.0
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 6.6e-06 57.4 117 28.2
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 6.6e-06 57.4 142 24.6
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 8.6e-06 57.0 135 23.0
FAN04G0610 Fragaria x ananassa HOM05D007291 ORTHO05D009038 8.6e-06 57.0 131 23.7
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 8.6e-06 57.0 296 24.7
Os10g0147250 Oryza sativa ssp. japonica HOM05D011046 ORTHO05D013342 8.6e-06 57.0 67 41.8
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 8.6e-06 57.0 201 26.9
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 8.6e-06 57.0 202 21.3
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 8.6e-06 57.0 101 31.7


User provided reference genes

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